CF417625 | Citrus Genome Database

Overview


Name	CF417625
Unique Name	CF417625
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	675

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9884	contig	Csv1_Contig9884:49..723.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 2.504e-95
Identity = 135/161 (83.85%), Postives = 143/161 (88.82%), Query Frame = 2

Query:   59 FVGKAVNLAPSGNELSNGGRISMRKTGSKS---VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGS 532
            F GKAVN+  S        R++MRKT +K+    +SGSPWYGPDRV YLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIWACQVVL G+
Sbjct:   13 FAGKAVNVPSSS---FGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGA 170

HSP 2 Score: 93.2041 bits (230), Expect = 2.504e-95
Identity = 43/46 (93.48%), Postives = 44/46 (95.65%), Query Frame = 3

Query:  525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662
            MGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLADDPEAF ELKVK+
Sbjct:  168 MGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLADDPEAFGELKVKE 213

[Close]

BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 8.688e-93
Identity = 131/158 (82.91%), Postives = 142/158 (89.87%), Query Frame = 2

Query:   59 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGS 532
            F GKAV L+P  +E+   GR++MRKT   +  SGSPWYG DRVKYLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIWA QV+L G+
Sbjct:   13 FAGKAVKLSPGASEVFGTGRVTMRKTVKPTGPSGSPWYGSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGA 170

HSP 2 Score: 81.2629 bits (199), Expect = 8.688e-93
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 3

Query:  525 MGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662
            MGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVK+
Sbjct:  168 MGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKE 214

[Close]

BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 8.689e-93
Identity = 132/156 (84.62%), Postives = 140/156 (89.74%), Query Frame = 2

Query:   65 GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGS 532
            GKAV +APS +EL   GR+SMRKT    VS  SPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSIL+IWA QV+L G+
Sbjct:   15 GKAVKVAPSSSELFGNGRVSMRKTVKAPVSD-SPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGA 169

HSP 2 Score: 87.4261 bits (215), Expect = 8.689e-93
Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 3

Query:  525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662
            MGAVEGYR+AGGPLGE+ DPLYPGGSFDPLGLA+DPE  AELKVK+
Sbjct:  167 MGAVEGYRVAGGPLGEIVDPLYPGGSFDPLGLAEDPERSAELKVKE 212

[Close]

BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 5.587e-92
Identity = 129/158 (81.65%), Postives = 136/158 (86.08%), Query Frame = 2

Query:   59 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGS 532
            F GKAV    S +E+    R+SMRKT +     GSPWYGPDRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFK G+QIFSEGGL YLGNPSL+HAQSILAIWACQVVL G+
Sbjct:   13 FAGKAVKNLSSSSEVQGDARVSMRKTAATK-KVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGA 169

HSP 2 Score: 91.2781 bits (225), Expect = 5.587e-92
Identity = 42/46 (91.30%), Postives = 44/46 (95.65%), Query Frame = 3

Query:  525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662
            MGAVEGYR+AGGPLGEV DPLYPGGSFDPLGLADD EAFAELKVK+
Sbjct:  167 MGAVEGYRVAGGPLGEVVDPLYPGGSFDPLGLADDAEAFAELKVKE 212

[Close]

BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 274.248 bits (700), Expect = 7.974e-91
Identity = 130/159 (81.76%), Postives = 143/159 (89.94%), Query Frame = 2

Query:   59 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGS 532
            F GKAVNL+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+L G+
Sbjct:   13 FAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGA 171

HSP 2 Score: 81.2629 bits (199), Expect = 7.974e-91
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 3

Query:  525 MGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662
            MGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVK+
Sbjct:  169 MGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKE 215

[Close]

BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 3.930e-90
Identity = 129/159 (81.13%), Postives = 142/159 (89.31%), Query Frame = 2

Query:   59 FVGKAVNLAPSGNELSNGGRISMRKTGSKSVS-SGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGS 532
            F GKAV L+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGP SGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIWA QV+L G+
Sbjct:   13 FAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGA 171

HSP 2 Score: 81.2629 bits (199), Expect = 3.930e-90
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 3

Query:  525 MGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662
            MGAVEGYR+AG GPLGE  D LYPGGSFDPLGLA DPEAFAELKVK+
Sbjct:  169 MGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKE 215

[Close]

BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.312e-83
Identity = 118/142 (83.10%), Postives = 125/142 (88.03%), Query Frame = 2

Query:  113 GRISMRKTGSKS--VSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGS 532
            GRI+MRKT +K     SGSPWYG DRV YLGPLSG PPSYLTGEFPGDYGWDT GLSADPETFAKNRELEVIHCRWA+   LGCVFPELLARNGVKFGE VWFKAG+QIFSEGGL + GNPSL+HAQSILAIWACQVVL G+
Sbjct:   28 GRITMRKTAAKPKPARSGSPWYGADRVLYLGPLSGSPPSYLTGEFPGDYGWDTEGLSADPETFAKNRELEVIHCRWAIAVGLGCVFPELLARNGVKFGEGVWFKAGSQIFSEGGLSHPGNPSLVHAQSILAIWACQVVLMGA 169

HSP 2 Score: 81.6481 bits (200), Expect = 3.312e-83
Identity = 38/46 (82.61%), Postives = 40/46 (86.96%), Query Frame = 3

Query:  525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662
            MGAVEGY +AGG LGEV DPLY GGSFDPLGL DDPE FAELKVK+
Sbjct:  167 MGAVEGYHVAGGRLGEVVDPLYLGGSFDPLGLGDDPERFAELKVKE 212

[Close]

BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 244.202 bits (622), Expect = 3.620e-82
Identity = 122/163 (74.85%), Postives = 134/163 (82.21%), Query Frame = 2

Query:   59 FVGKAVNLAPSGNELSNG------GRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDG 529
            FVG+AV    S NE          GRI+MR+T   +  S   WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+L+HAQSILAIWACQVVL G
Sbjct:   11 FVGQAVG--KSQNEFIRKVGNFGEGRITMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMG 169

HSP 2 Score: 82.4185 bits (202), Expect = 3.620e-82
Identity = 37/46 (80.43%), Postives = 41/46 (89.13%), Query Frame = 3

Query:  525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662
            MG VEGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVK+
Sbjct:  168 MGFVEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKE 213

[Close]

BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 253.062 bits (645), Expect = 4.733e-82
Identity = 119/142 (83.80%), Postives = 128/142 (90.14%), Query Frame = 2

Query:  107 NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDGS 532
            NGGR+SMR+T   +  S   WYGPDR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLA+NGVKFGEAVWFKAG+QIF EGGLDYLGNP+L+HAQSILAIWACQVVL G+
Sbjct:   30 NGGRVSMRRTIKSAPES--IWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGA 169

HSP 2 Score: 73.1738 bits (178), Expect = 4.733e-82
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 3

Query:  525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAF 641
            MGAVEGYR+ GGPLGE  D LYPGG+FDPLGLA+DPEAF
Sbjct:  167 MGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205

[Close]

BLAST of CF417625 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 1.783e-81
Identity = 114/141 (80.85%), Postives = 125/141 (88.65%), Query Frame = 2

Query:  107 NGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLDG 529
            NGGR +MR+T   +  S   WYG DR KYLGP S + PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHCRWAMLGALGCVFPE+L++NGVKFGEAVWFKAG+QIFSEGGLDYLGNP+LIHAQSILA+WA QVVL G
Sbjct:   31 NGGRATMRRTVKSAPQS--IWYGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMG 169

HSP 2 Score: 82.4185 bits (202), Expect = 1.783e-81
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 3

Query:  525 MGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKK 662
            MG +EGYR+ GGPLGE  D +YPGG+FDPLGLADDPEAFAELKVK+
Sbjct:  168 MGLIEGYRVGGGPLGEGLDKIYPGGAFDPLGLADDPEAFAELKVKE 213

The following BLAST results are available for this feature:

BLAST of CF417625 vs. ExPASy Swiss-Prot

BLAST of CF417625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74


Match Name	E-value	Identity	Description
CB22_MAIZE	2.504e-95	83.85	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB21_SINAL	8.688e-93	82.91	Chlorophyll a-b binding protein 1, chloroplastic O...	[more]
CB23_APIGR	8.689e-93	84.62	Chlorophyll a-b binding protein, chloroplastic OS=...	[more]
CB22_HORVU	5.587e-92	81.65	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB21_ARATH	7.974e-91	81.76	Chlorophyll a-b binding protein 165/180, chloropla...	[more]
CB22_ARATH	3.930e-90	81.13	Chlorophyll a-b binding protein 2, chloroplastic O...	[more]
CB48_MAIZE	3.312e-83	83.10	Chlorophyll a-b binding protein 48, chloroplastic ...	[more]
CB24_SOLLC	3.620e-82	74.85	Chlorophyll a-b binding protein 4, chloroplastic O...	[more]
CB21_SILPR	4.733e-82	83.80	Chlorophyll a-b binding protein, chloroplastic (Fr...	[more]
CB23_TOBAC	1.783e-81	80.85	Chlorophyll a-b binding protein 36, chloroplastic ...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_115000-555 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_D05 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417625 ID=CF417625; Name=CF417625; organism=Citrus sinensis; type=EST; length=675bp
TTCTGCTTCTCAATTAAATTCCTCAATGGCAACCTCAACAATGGCTCTCT
CCTCATCATTCGTCGGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAG
CTGAGCAATGGTGGCCGCATCTCCATGCGTAAAACCGGGAGCAAGTCTGT
TTCTTCAGGTAGCCCGTGGTACGGCCCGGACAGAGTCAAGTACTTGGGCC
CACTCTCTGGCGAGCCCCCAAGCTACTTGACTGGTGAGTTCCCTGGCGAC
TACGGTTGGGACACTGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAA
GAACCGTGAACTCGAAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTC
TTGGATGCGTCTTCCCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGT
GAGGCTGTGTGGTTCAAGGCGGGAGCTCAGATCTTCAGCGAGGGCGGGCT
TGACTACTTGGGAAACCCAAGCTTGATCCACGCCCAGAGCATCTTGGCCA
TCTGGGCTTGCCAGGTGGTCTTGGATGGGAGCCGTTGAGGGTTACAGAAT
TGCTGGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCA
GCTTTGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTC
AAGGTTAAGAAATCAAGAATGGAAG