CF417630

Overview
NameCF417630
Unique NameCF417630
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length409
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417630_ssr101 microsatellite CF417630_ssr101:101..112. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13513 contig Csv1_Contig13513:53..461. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417630 vs. ExPASy Swiss-Prot
Match: RS30_ARATH (40S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=1 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 5.557e-22
Identity = 50/62 (80.65%), Postives = 52/62 (83.87%), Query Frame = 2 
Query:   26 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 211
            MGKVHGSLARAGKVRGQTP          PRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK
Sbjct:    1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSSEK 62
[Close]
BLAST of CF417630 vs. ExPASy Swiss-Prot
Match: RS30_RAT (40S ribosomal protein S30 OS=Rattus norvegicus GN=Fau PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.501e-14
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 2 
Query:   32 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 205
            KVHGSLARAGKVRGQTP            GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct:    1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
[Close]
BLAST of CF417630 vs. ExPASy Swiss-Prot
Match: RS30_PONAB (40S ribosomal protein S30 OS=Pongo abelii GN=FAU PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.501e-14
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 2 
Query:   32 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 205
            KVHGSLARAGKVRGQTP            GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct:    1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
[Close]
BLAST of CF417630 vs. ExPASy Swiss-Prot
Match: RS30_PIG (40S ribosomal protein S30 OS=Sus scrofa GN=FAU PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.501e-14
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 2 
Query:   32 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 205
            KVHGSLARAGKVRGQTP            GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct:    1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
[Close]
BLAST of CF417630 vs. ExPASy Swiss-Prot
Match: RS30_MUSSI (40S ribosomal protein S30 OS=Mus spicilegus GN=Fau PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.501e-14
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 2 
Query:   32 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 205
            KVHGSLARAGKVRGQTP            GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct:    1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
[Close]
BLAST of CF417630 vs. ExPASy Swiss-Prot
Match: RS30_MOUSE (40S ribosomal protein S30 OS=Mus musculus GN=Fau PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.501e-14
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 2 
Query:   32 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 205
            KVHGSLARAGKVRGQTP            GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct:    1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
[Close]
BLAST of CF417630 vs. ExPASy Swiss-Prot
Match: RS30_HUMAN (40S ribosomal protein S30 OS=Homo sapiens GN=FAU PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.501e-14
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 2 
Query:   32 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 205
            KVHGSLARAGKVRGQTP            GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct:    1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
[Close]
BLAST of CF417630 vs. ExPASy Swiss-Prot
Match: RS30_CRIGR (40S ribosomal protein S30 OS=Cricetulus griseus GN=FAU PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.501e-14
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 2 
Query:   32 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 205
            KVHGSLARAGKVRGQTP            GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct:    1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
[Close]
BLAST of CF417630 vs. ExPASy Swiss-Prot
Match: RS30_BOVIN (40S ribosomal protein S30 OS=Bos taurus GN=FAU PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.501e-14
Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 2 
Query:   32 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 205
            KVHGSLARAGKVRGQTP            GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct:    1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
[Close]
BLAST of CF417630 vs. ExPASy Swiss-Prot
Match: RS30_ORYLA (40S ribosomal protein S30 OS=Oryzias latipes GN=fau PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.056e-12
Identity = 35/58 (60.34%), Postives = 40/58 (68.97%), Query Frame = 2 
Query:   32 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 205
            KVHGSLARAGKVRGQTP            GRA +R+QYNRRFV  V  FGKK+G N++
Sbjct:    1 KVHGSLARAGKVRGQTPNVDKHEEKEEEDGRAKRRIQYNRRFVNVVPTFGKKKGANAN 58
The following BLAST results are available for this feature:
BLAST of CF417630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
RS30_ARATH5.557e-2280.6540S ribosomal protein S30 OS=Arabidopsis thaliana ... [more]
RS30_RAT9.501e-1463.7940S ribosomal protein S30 OS=Rattus norvegicus GN=... [more]
RS30_PONAB9.501e-1463.7940S ribosomal protein S30 OS=Pongo abelii GN=FAU P... [more]
RS30_PIG9.501e-1463.7940S ribosomal protein S30 OS=Sus scrofa GN=FAU PE=... [more]
RS30_MUSSI9.501e-1463.7940S ribosomal protein S30 OS=Mus spicilegus GN=Fau... [more]
RS30_MOUSE9.501e-1463.7940S ribosomal protein S30 OS=Mus musculus GN=Fau P... [more]
RS30_HUMAN9.501e-1463.7940S ribosomal protein S30 OS=Homo sapiens GN=FAU P... [more]
RS30_CRIGR9.501e-1463.7940S ribosomal protein S30 OS=Cricetulus griseus GN... [more]
RS30_BOVIN9.501e-1463.7940S ribosomal protein S30 OS=Bos taurus GN=FAU PE=... [more]
RS30_ORYLA3.056e-1260.3440S ribosomal protein S30 OS=Oryzias latipes GN=fa... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-560 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417630 ID=CF417630; Name=CF417630; organism=Citrus sinensis; type=EST; length=409bp
AACAAGACTACTCAAACGATCAGCTATGGGTAAGGTTCACGGATCTTTGG
CTCGTGCCGGTAAGGTGAGAGGCCAAACTCCTAAAGTTGCTAAACAGGAT
AAGAAGAAGAAGCCACGGGGCCGCGCCCACAAGCGCATGCAATACAACCG
CCGCTTCGTCACCGCAGTGGTTGGTTTTGGAAAGAAAAGAGGACCCAACT
CATCTGAGAAGTAAAAAAATGCTTGAGAGGATGAATGAAGAAGGGTTAGA
TAGGTGAAAAAGCACTTGGTGTTTTTGATAATTTCTCTTATGTTGTGTTT
AAAGACCTTATTATGGTATTCTGTTACTAATGTTATGTTTTGAGATTTTG
TCTCTCTTAAACTTGTGATCATCATTTTGTTAGTAGAGATTATGTGATTT
TCTTTTCAA
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