CF417632

Overview
NameCF417632
Unique NameCF417632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig472 contig Csv1_Contig472:1..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417632 vs. ExPASy Swiss-Prot
Match: PX11D_ARATH (Peroxisomal membrane protein 11D OS=Arabidopsis thaliana GN=PEX11D PE=1 SV=2)

HSP 1 Score: 292.738 bits (748), Expect = 1.164e-78
Identity = 147/178 (82.58%), Postives = 159/178 (89.33%), Query Frame = 3
Query:  147 STLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGXLGRLSTSMXXXXXXXXXXXXXXNEQYQAKLKKSNE 680
            +TLD +RAELALVV+YLNKAEARDK+CRAIQYGSKFLS GQPGTAQNVDKSTSLARKVFRLFKFVNDLH LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKERAELLGRISLFCWMGSSVC+TLVE+G +GRLS+SM              +E Y+AKLKKSNE
Sbjct:    3 TTLDVSRAELALVVMYLNKAEARDKLCRAIQYGSKFLSGGQPGTAQNVDKSTSLARKVFRLFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERAELLGRISLFCWMGSSVCTTLVEVGEMGRLSSSMKKIEKGLKNGNKYQDEDYRAKLKKSNE 180          
BLAST of CF417632 vs. ExPASy Swiss-Prot
Match: PX11C_ARATH (Peroxisomal membrane protein 11C OS=Arabidopsis thaliana GN=PEX11C PE=1 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.520e-78
Identity = 146/179 (81.56%), Postives = 161/179 (89.94%), Query Frame = 3
Query:  144 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGXLGRLSTSMXXXXXXXXXXXXXXNEQYQAKLKKSNE 680
            MSTL+ TRAEL LVV+YLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDK+TSLARKVFRLFKFVNDLHALISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGR+GIYK+KERAE+LGRISLFCWMGSSVC++LVE+G LGRLS S+              NEQY+AK++KSNE
Sbjct:    1 MSTLETTRAELGLVVVYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKNTSLARKVFRLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRTGIYKDKERAEILGRISLFCWMGSSVCTSLVEVGELGRLSASIKKLEKEIGNKDKHQNEQYRAKVEKSNE 179          
BLAST of CF417632 vs. ExPASy Swiss-Prot
Match: PX11E_ARATH (Peroxisomal membrane protein 11E OS=Arabidopsis thaliana GN=PEX11E PE=1 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.332e-74
Identity = 142/179 (79.33%), Postives = 156/179 (87.15%), Query Frame = 3
Query:  144 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGXLGRLSTSMXXXXXXXXXXXXXXNEQYQAKLKKSNE 680
            M+TLD TRAELAL+VLYLNKAEARDKICRAIQYGSKFLS GQPGTAQ VDK+TSLARKVFRLFKFVND H LISPVP+GTPLPLVLLGKSKNALLSTFLFLDQ+VWLGRSGIYKNKER ELLGRISLFCW+GSSVC++ VE+G LGRLS+SM              +E Y+AKL+KSN+
Sbjct:    1 MTTLDLTRAELALIVLYLNKAEARDKICRAIQYGSKFLSGGQPGTAQTVDKNTSLARKVFRLFKFVNDFHGLISPVPKGTPLPLVLLGKSKNALLSTFLFLDQIVWLGRSGIYKNKERTELLGRISLFCWLGSSVCTSAVEIGELGRLSSSM----KKMEKELKADDELYRAKLQKSND 175          
BLAST of CF417632 vs. ExPASy Swiss-Prot
Match: PX111_ORYSJ (Peroxisomal membrane protein 11-1 OS=Oryza sativa subsp. japonica GN=PEX11-1 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.426e-68
Identity = 132/179 (73.74%), Postives = 150/179 (83.80%), Query Frame = 3
Query:  144 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGXLGRLSTSMXXXXXXXXXXXXXXNEQYQAKLKKSNE 680
            MSTLDATRAEL LVVLYLNKAEARDKICRAIQYGSKF+S+GQPGTAQ+VD+ST+LARKVFRL K+VNDLH LISP  +GTPL LVLLGKSKNALLSTFLFLDQ VWLGR+GIYKNKER + + RISL+CWM SSVC+ LVELG L RLS SM              N+QY++K+K+S+E
Sbjct:    1 MSTLDATRAELGLVVLYLNKAEARDKICRAIQYGSKFISNGQPGTAQDVDRSTTLARKVFRLLKWVNDLHGLISPPAKGTPLTLVLLGKSKNALLSTFLFLDQFVWLGRTGIYKNKERTDRIVRISLYCWMASSVCAGLVELGELKRLSKSMRKLARELRDTDKYENDQYKSKMKQSDE 179          
BLAST of CF417632 vs. ExPASy Swiss-Prot
Match: PX115_ORYSJ (Peroxisomal membrane protein 11-5 OS=Oryza sativa subsp. japonica GN=PEX11-5 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.078e-68
Identity = 126/179 (70.39%), Postives = 150/179 (83.80%), Query Frame = 3
Query:  144 MSTLDATRAELALVVLYLNKAEARDKICRAIQYGSKFLSDGQPGTAQNVDKSTSLARKVFRLFKFVNDLHALISPVPQGTPLPLVLLGKSKNALLSTFLFLDQVVWLGRSGIYKNKERAELLGRISLFCWMGSSVCSTLVELGXLGRLSTSMXXXXXXXXXXXXXXNEQYQAKLKKSNE 680
            MS+L++ RA+LAL++LYLNKAEARDKICRAIQYGSKF+S+GQPG AQNVDKSTSLARKVFRLFKFVNDLHALISP  +GTPLPL+LLGKSKNALLSTFLFLDQ+VW GR+GIYKNKERAE L +I+ +C++GS+ C++++E+  L RLS SM              NEQYQ KL+K NE
Sbjct:    1 MSSLESARADLALLILYLNKAEARDKICRAIQYGSKFVSNGQPGPAQNVDKSTSLARKVFRLFKFVNDLHALISPPAKGTPLPLILLGKSKNALLSTFLFLDQIVWAGRTGIYKNKERAEFLSKIAFYCFLGSNTCTSIIEVAELQRLSKSMKKLEKELKHQELLKNEQYQMKLQKCNE 179          
The following BLAST results are available for this feature:
BLAST of CF417632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PX11D_ARATH1.164e-7882.58Peroxisomal membrane protein 11D OS=Arabidopsis th... [more]
PX11C_ARATH1.520e-7881.56Peroxisomal membrane protein 11C OS=Arabidopsis th... [more]
PX11E_ARATH1.332e-7479.33Peroxisomal membrane protein 11E OS=Arabidopsis th... [more]
PX111_ORYSJ1.426e-6873.74Peroxisomal membrane protein 11-1 OS=Oryza sativa ... [more]
PX115_ORYSJ7.078e-6870.39Peroxisomal membrane protein 11-5 OS=Oryza sativa ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-562 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_E01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417632 ID=CF417632; Name=CF417632; organism=Citrus sinensis; type=EST; length=680bp
AACGACGCTATAGCTGACGGTAGCTTAACTAAAGGGCAGCCTCTGCAACT
TTTCTCAGATAAAATTAAGGGAAATAAGAAAAAAAAAAGGCCAAATTTGA
GCTTTTCGAGGCCAAATCGTTGCGCACTTTTTTCGGATAAAAAATGAGTA
CACTGGATGCAACCAGAGCAGAACTTGCACTTGTGGTTTTGTATTTGAAT
AAGGCTGAAGCCAGGGACAAGATATGCAGAGCTATACAATATGGTTCAAA
ATTCTTGAGTGATGGACAGCCTGGTACTGCCCAAAATGTTGACAAGTCAA
CCAGCTTAGCCCGGAAAGTTTTCCGTCTTTTTAAGTTTGTCAATGATTTG
CACGCTCTTATCAGCCCAGTTCCCCAAGGAACTCCGCTTCCACTTGTTTT
GCTGGGAAAGTCCAAGAATGCATTATTGTCAACTTTCTTATTTCTTGATC
AAGTCGTTTGGCTTGGCAGATCAGGCATCTACAAGAACAAAGAGCGTGCA
GAATTGCTTGGTCGGATATCTCTTTTTTGTTGGATGGGTTCCTCAGTTTG
TAGCACATTAGTTGAGCTTGGANAGCTTGGGAGGCTTTCTACATCAATGA
AAAAGTTAGAGAAGGAGCTTAAGGACAGTGATAAGCATAAAAATGAACAA
TACCAAGCTAAACTTAAAAAATCAAATGAG
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