CF417639

Overview
NameCF417639
Unique NameCF417639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:38..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 4.875e-94
Identity = 108/115 (93.91%), Postives = 114/115 (99.13%), Query Frame = 1
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLR 363
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL++++RNRLKYALTYREVI+ILMQR V+VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLR
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLR 115          

HSP 2 Score: 135.576 bits (340), Expect = 4.875e-94
Identity = 64/74 (86.49%), Postives = 67/74 (90.54%), Query Frame = 2
Query:  365 DEEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRNR 586
            DEE+KF LCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKA DTIKLDL  NKI DFI  DVGN+VMVTGGRNR
Sbjct:  116 DEESKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNR 189          
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 6.359e-94
Identity = 108/115 (93.91%), Postives = 114/115 (99.13%), Query Frame = 1
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLR 363
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLIL++RNRLKYALTYREVI+ILMQRHVLVDGKVRTDKTYPAGFMDV+SIPKTNEN+RLLYDTKGRFRLH +R
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTNENYRLLYDTKGRFRLHPIR 115          

HSP 2 Score: 134.42 bits (337), Expect = 6.359e-94
Identity = 63/76 (82.89%), Postives = 67/76 (88.16%), Query Frame = 2
Query:  356 PSEDEEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            P  DE+AKF LCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKA DTIK+DL  NKI DFI  DVGN+VMVTGGRN
Sbjct:  113 PIRDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRN 188          
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 229.18 bits (583), Expect = 6.360e-94
Identity = 107/115 (93.04%), Postives = 114/115 (99.13%), Query Frame = 1
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLR 363
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+L++RNRLKYALTYREVI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIK 115          

HSP 2 Score: 135.191 bits (339), Expect = 6.360e-94
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 2
Query:  362 EDEEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRNR 586
            +DEEAKF LCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK  DTIKLDL ENKI +FI  DVGN+VMVTGGRNR
Sbjct:  115 KDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNR 189          
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 6.360e-94
Identity = 107/115 (93.04%), Postives = 114/115 (99.13%), Query Frame = 1
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLR 363
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+L++RNRLKYALTYREVI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIK 115          

HSP 2 Score: 135.191 bits (339), Expect = 6.360e-94
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = 2
Query:  362 EDEEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRNR 586
            +DEEAKF LCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK  DTIKLDL ENKI +FI  DVGN+VMVTGGRNR
Sbjct:  115 KDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEENKIVEFIKFDVGNVVMVTGGRNR 189          
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 3.135e-93
Identity = 107/115 (93.04%), Postives = 114/115 (99.13%), Query Frame = 1
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLR 363
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPL+L++RNRLKYALTYREVI+ILMQRH+ VDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHS++
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSIK 115          

HSP 2 Score: 132.88 bits (333), Expect = 3.135e-93
Identity = 62/75 (82.67%), Postives = 67/75 (89.33%), Query Frame = 2
Query:  362 EDEEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRNR 586
            +DEEAKF LCKVRS+QFGQKGIPY+NTYDGRTIRYPDPLIK  DTIKLDL  NKI +FI  DVGN+VMVTGGRNR
Sbjct:  115 KDEEAKFKLCKVRSIQFGQKGIPYLNTYDGRTIRYPDPLIKPNDTIKLDLEANKIVEFIKFDVGNVVMVTGGRNR 189          
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 2.630e-92
Identity = 108/116 (93.10%), Postives = 114/116 (98.28%), Query Frame = 1
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRG 366
            MARGLKKHLKRLNAP+HWMLDKLGGAFAPKPSSGPHKSRECLPLIL+LRNRLKYALTYREVIAILMQRHV+VDGKVRTDKTYPAGFMDVVSIPKTNE+FRLLYDTKGRF LH++ G
Sbjct:    1 MARGLKKHLKRLNAPRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRTDKTYPAGFMDVVSIPKTNEDFRLLYDTKGRFCLHAITG 116          

HSP 2 Score: 131.724 bits (330), Expect = 2.630e-92
Identity = 62/73 (84.93%), Postives = 65/73 (89.04%), Query Frame = 2
Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRNR 586
            +E KF LCKVRSVQFGQKGIPY+NTYDGRTIRYPDPLIKA DTIKLDL  NKI DFI  DVGN+VMVTGGRNR
Sbjct:  117 DETKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPLIKANDTIKLDLESNKIVDFIKFDVGNVVMVTGGRNR 189          
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3)

HSP 1 Score: 224.942 bits (572), Expect = 9.935e-92
Identity = 106/115 (92.17%), Postives = 113/115 (98.26%), Query Frame = 1
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLR 363
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLIL++RNRLKYALTYREVI+ILMQRHVLVDGKVRTDKTYPAGFMDV+SIPKT EN+RLLYDTKGRFRL S++
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSVK 115          

HSP 2 Score: 132.109 bits (331), Expect = 9.935e-92
Identity = 61/74 (82.43%), Postives = 67/74 (90.54%), Query Frame = 2
Query:  362 EDEEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            +DE+AKF LCKVRSVQFGQKGIPY+NTYDGRTIRYPDP+IKA DTIK+DL  NKI DFI  DVGN+VMVTGGRN
Sbjct:  115 KDEDAKFKLCKVRSVQFGQKGIPYLNTYDGRTIRYPDPIIKANDTIKIDLETNKIVDFIKFDVGNVVMVTGGRN 188          
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.193e-86
Identity = 98/115 (85.22%), Postives = 105/115 (91.30%), Query Frame = 1
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSLR 363
            MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLIL+LRNRLKYALTYREV++ILMQRH+LVDGK+     +     DVVSIPKTNENFRLLYDTKGRFRLHS+R
Sbjct:    1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVVSILMQRHILVDGKIH----FCIRLSDVVSIPKTNENFRLLYDTKGRFRLHSIR 111          

HSP 2 Score: 137.887 bits (346), Expect = 1.193e-86
Identity = 66/74 (89.19%), Postives = 68/74 (91.89%), Query Frame = 2
Query:  365 DEEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRNR 586
            DEE+KF LCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKA DTIKLDL  NKITDFI  DVGN+VMVTGGRNR
Sbjct:  112 DEESKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNR 185          
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 4.105e-69
Identity = 85/114 (74.56%), Postives = 96/114 (84.21%), Query Frame = 1
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKRL AP HW+LDKL G +AP+PS+GPHK RE LPLI+ LRNRLKYAL  REV AILMQRHV VDGKVRTD TYPAGFMDV+++  TNENFRL+YD KGRF +H +
Sbjct:    1 MARGPKKHLKRLAAPHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFMDVITLDATNENFRLVYDVKGRFAVHRI 114          

HSP 2 Score: 102.834 bits (255), Expect = 4.105e-69
Identity = 47/73 (64.38%), Postives = 56/73 (76.71%), Query Frame = 2
Query:  365 DEEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            DEEA + L KV+ VQ G+KG+PY+ T+DGRTIRYPDP IK  DT+K+DL   KITDFI  D G +V VTGGRN
Sbjct:  116 DEEASYKLGKVKKVQLGKKGVPYVVTHDGRTIRYPDPNIKVNDTVKIDLASGKITDFIKFDAGKLVYVTGGRN 188          
BLAST of CF417639 vs. ExPASy Swiss-Prot
Match: RS4_CRIGR (40S ribosomal protein S4 OS=Cricetulus griseus GN=RPS4 PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 5.354e-69
Identity = 86/114 (75.44%), Postives = 96/114 (84.21%), Query Frame = 1
Query:   19 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILVLRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLHSL 360
            MARG KKHLKR+ APKHWMLDKL G FAP+PS+GPHK RECLPLI+ LRNRLKYALT  EV  I MQR + +DGKVRTD TYPAGFMDV+SI KT ENFRL+YDTKGRF +H +
Sbjct:    1 MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALTGDEVKKICMQRFIKIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRI 114          

HSP 2 Score: 100.908 bits (250), Expect = 5.354e-69
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 2
Query:  368 EEAKFXLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKAXDTIKLDLXENKITDFIXXDVGNIVMVTGGRN 583
            EEAK+ LCKVR +  G KGIP++ T+D RTIRYPDPLIK  DTI++DL   KITDFI  D GN+ MVTGG N
Sbjct:  117 EEAKYKLCKVRKIFVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGAN 188          
The following BLAST results are available for this feature:
BLAST of CF417639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RS4_SOLTU4.875e-9493.9140S ribosomal protein S4 OS=Solanum tuberosum GN=R... [more]
RS4_MAIZE6.359e-9493.9140S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 ... [more]
RS42_ARATH6.360e-9493.0440S ribosomal protein S4-2 OS=Arabidopsis thaliana... [more]
RS41_ARATH6.360e-9493.0440S ribosomal protein S4-1 OS=Arabidopsis thaliana... [more]
RS43_ARATH3.135e-9393.0440S ribosomal protein S4-3 OS=Arabidopsis thaliana... [more]
RS4_GOSHI2.630e-9293.1040S ribosomal protein S4 OS=Gossypium hirsutum GN=... [more]
RS4_ORYSJ9.935e-9292.1740S ribosomal protein S4 OS=Oryza sativa subsp. ja... [more]
RS4_PRUAR1.193e-8685.2240S ribosomal protein S4 OS=Prunus armeniaca GN=RP... [more]
RS4_YEAST4.105e-6974.5640S ribosomal protein S4 OS=Saccharomyces cerevisi... [more]
RS4_CRIGR5.354e-6975.4440S ribosomal protein S4 OS=Cricetulus griseus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-569 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417639 ID=CF417639; Name=CF417639; organism=Citrus sinensis; type=EST; length=587bp
AGCTTCAAACTCACAAAAATGGCTAGAGGATTGAAGAAGCACTTGAAGAG
GCTCAATGCCCCTAAGCACTGGATGCTTGACAAGCTTGGTGGTGCATTTG
CACCTAAGCCATCATCTGGTCCCCACAAGTCAAGGGAATGCTTGCCATTG
ATCCTTGTATTGCGAAACCGTTTGAAATATGCTCTCACATATCGTGAAGT
TATTGCTATTCTGATGCAACGACATGTTCTTGTTGATGGGAAGGTTAGGA
CAGATAAGACCTACCCTGCTGGTTTCATGGATGTTGTGTCAATTCCCAAG
ACCAACGAGAACTTCCGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCT
CCATTCCCTCAGAGGATGAGGAGGCAAAATTCNAGCTTTGCAAAGTTAGA
TCAGTCCAGTTTGGCCAGAAAGGTATCCCATACATCAACACCTATGATGG
GCGTACCATCCGCTACCCTGACCCACTCATCAAAGCCNATGATACCATCA
AACTTGACTTANAAGAGAACAAGATCACTGACTTCATCNAGNTTGATGTT
GGGAATATTGTCATGGTCACTGGGGGTAGAAACAGAG
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