CF417641

Overview
NameCF417641
Unique NameCF417641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417641_ssr46 microsatellite CF417641_ssr46:46..57. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF417641 vs. ExPASy Swiss-Prot
Match: Y1280_ARATH (Uncharacterized protein At1g22800 OS=Arabidopsis thaliana GN=At1g22800 PE=2 SV=2)

HSP 1 Score: 304.294 bits (778), Expect = 3.968e-82
Identity = 154/214 (71.96%), Postives = 178/214 (83.18%), Query Frame = 1
Query:   58 ANNEPYALVPSGSFCTDNGFETTSN---GSSRVNIFDRHLKRKQRDRAAWLTRP-NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQCKLALKPDGLFLGAILGGETLKELRIACTVAXMEREGGISPRVSP 687
            +  + +  + S SF T+  +         SS+V IFDR LKR  RDRAAWL+R  NDSFVDAVA+NLLDRLEDC+K+FPTA CLGGSL AV+RLLRGRGGIEKLIMMDTSYDM+K C+DAQ D+ +++IET + VGDEEFLP+KESS+DL IS LGLHWTNDLPG+MIQCKLALKPDGLFL AILGGETLKELRIACT+A MEREGGISPR+SP
Sbjct:   21 STKQAHTFLASLSFSTEGAYGGDGEFQQNSSKVKIFDRDLKRIHRDRAAWLSRQKNDSFVDAVADNLLDRLEDCKKSFPTAFCLGGSLGAVKRLLRGRGGIEKLIMMDTSYDMIKSCRDAQDDSLDNSIETSYFVGDEEFLPVKESSVDLIISSLGLHWTNDLPGSMIQCKLALKPDGLFLAAILGGETLKELRIACTLAHMEREGGISPRLSP 234          
BLAST of CF417641 vs. ExPASy Swiss-Prot
Match: CT007_HUMAN (Probable methyltransferase C20orf7, mitochondrial OS=Homo sapiens GN=C20orf7 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.884e-32
Identity = 80/191 (41.88%), Postives = 109/191 (57.07%), Query Frame = 1
Query:  127 SNGSSRVNIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDT--SYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQCKLALKPDGLFLGAILGGETLKELRIACTVAXMEREGGISPRVSP 687
            S     +NIFDR LKRKQ++ AA    P   D   + V   + DR+ D  + FP AL LG           GRG I + +  +T   +    + ++A +++    I T  V+ DEEFLP KE++ DL +S L LHW NDLP A+ Q    LKPDG+F+GA+ GG+TL ELR +  +A  EREGG SP +SP
Sbjct:   38 STSPRTLNIFDRDLKRKQKNWAARQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGC----------GRGYIAQYLNKETIGKFFQADIAENALKNSSETEIPTVSVLADEEFLPFKENTFDLVVSSLSLHWVNDLPRALEQIHYILKPDGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISP 218          
BLAST of CF417641 vs. ExPASy Swiss-Prot
Match: CT007_PONAB (Probable methyltransferase C20orf7 homolog, mitochondrial OS=Pongo abelii PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.391e-32
Identity = 79/191 (41.36%), Postives = 109/191 (57.07%), Query Frame = 1
Query:  127 SNGSSRVNIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDT--SYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQCKLALKPDGLFLGAILGGETLKELRIACTVAXMEREGGISPRVSP 687
            S     +NIFDR LKRKQ++ AA    P   D   + V   + DR+ D  + FP AL LG           GRG I + +  +T   +    + ++A +++    I T  V+ DEEFLP +E++ DL +S L LHW NDLP A+ Q    LKPDG+F+GA+ GG+TL ELR +  +A  EREGG SP +SP
Sbjct:   38 STSPRTLNIFDRDLKRKQKNWAAQQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLGC----------GRGYIAQYLNKETIGKFFQADIAENALKNSLETEIPTVSVLADEEFLPFRENTFDLVVSSLSLHWVNDLPRALEQIHYILKPDGVFIGAMFGGDTLYELRCSLQLAETEREGGFSPHISP 218          
BLAST of CF417641 vs. ExPASy Swiss-Prot
Match: CT007_DANRE (Probable methyltransferase C20orf7 homolog, mitochondrial OS=Danio rerio GN=zgc:162919 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.869e-31
Identity = 76/183 (41.53%), Postives = 111/183 (60.66%), Query Frame = 1
Query:  145 VNIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQCKLALKPDGLFLGAILGGETLKELRIACTVAXMEREGGISPRVSP 687
            +N+FDR +KR+Q+D A+ L   +  D   + V   + DR+ D  +TFP AL +G     +   L  +  +E+L + D S   L+  K +       +I    V+ DEEFLP KE++ DL +S L +HW NDLPGA+ Q    LKPDG+F+GA++GGETL ELR +  +A +EREGG +P +SP
Sbjct:   24 MNVFDRSMKRRQKDWASSLLDSSKYDYLREEVGSRVADRVYDVARTFPLALDVGCGRSHIAEHL-SKEVVERLFLTDISSSSLRNRKTS-------DIPAQCVMADEEFLPFKENTFDLVLSSLSMHWINDLPGALRQIHQVLKPDGVFIGAMVGGETLYELRCSLQLAELEREGGFAPHISP 198          
BLAST of CF417641 vs. ExPASy Swiss-Prot
Match: CT007_RAT (Probable methyltransferase C20orf7 homolog, mitochondrial OS=Rattus norvegicus PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.604e-30
Identity = 76/191 (39.79%), Postives = 109/191 (57.07%), Query Frame = 1
Query:  127 SNGSSRVNIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLK--LCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQCKLALKPDGLFLGAILGGETLKELRIACTVAXMEREGGISPRVSP 687
            S     +NIFDR LKRKQ++ AA    P   D   + +   + DR+ D  + FP AL +G           GRG I + +  +T   + +  + + A +++   +I T  ++ DEEFLP  E++ DL +S L LHW NDLP A+ Q    LKPDG+F+GA+ GG+TL ELR +  +A  EREGG SP +SP
Sbjct:   38 STSPRALNIFDRELKRKQKNWAARQPEPMKFDYLKEEIGSRIADRVYDIARDFPLALDIGC----------GRGYIAQHLNKETVGKIFQTDIAEHALKNSIETDIPTVNILADEEFLPFPENTFDLVVSSLSLHWVNDLPRALEQIHYVLKPDGVFVGAMFGGDTLYELRCSLQLAETEREGGFSPHISP 218          
BLAST of CF417641 vs. ExPASy Swiss-Prot
Match: CT007_MOUSE (Probable methyltransferase C20orf7 homolog, mitochondrial OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.604e-30
Identity = 77/191 (40.31%), Postives = 110/191 (57.59%), Query Frame = 1
Query:  127 SNGSSRVNIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLK--LCKDAQQDAHNDNIETCFVVGDEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQCKLALKPDGLFLGAILGGETLKELRIACTVAXMEREGGISPRVSP 687
            S     +NIFDR LKRKQ++ AA    P   D   + V   + DR+ D  + FP AL +G           GRG I + +  +T   + +  + + A +++   +I T  ++ DEEFLP +E++ DL +S L LHW NDLP A+ Q    LKPDG+F+GA+ GG+TL ELR +  +A  EREGG SP +SP
Sbjct:   38 STSPRALNIFDRELKRKQKNWAARQPDPMKFDYLKEEVGSRIADRVYDIARDFPLALDIGC----------GRGYIAQHLDKETVGKIFQTDIAEHALKNSLETDIPTVNILADEEFLPFQENTFDLVVSSLSLHWVNDLPRALEQIHYVLKPDGVFVGAMFGGDTLYELRCSLQLAETEREGGFSPHISP 218          
BLAST of CF417641 vs. ExPASy Swiss-Prot
Match: CT007_DICDI (Probable methyltransferase DDB_G0287769, mitochondrial OS=Dictyostelium discoideum GN=DDB_G0287769 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.237e-19
Identity = 61/196 (31.12%), Postives = 110/196 (56.12%), Query Frame = 1
Query:  139 SRVNIFDRHLKRKQRDRAAWLT---RPNDSFVDAVAENLLDRLEDCRKT-FPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDML-----KLCKDAQQDAHNDNIETCFVVG---DEEFLPLKESSLDLAISCLGLHWTNDLPGAMIQCKLALKPDGLFLGAILGGETLKELRIACTVAXMEREGGISPRVSP 687
            +++ IFD ++K  Q++         +  D  ++ VA+ L DR+ D +       L  G    A+ + ++ +G  I+K  M+++S ++L      + ++ + D +N+ ++   ++    +++   +++ SLDL IS L LHW NDLPG     K  LKP+G+FL ++ G +TL EL+ +  +A +EREGG SP VSP
Sbjct:   29 TKMTIFDTNVKTIQKNNTVTNVDDPKHYDYLMNEVADRLADRILDIKDIKCGNVLDFGSRNGALFKYIQEKGAKIDKYYMVESSKELLYRDDNNVSQENEDDNNNNKVKPTKILVNSLEDKIEGIEDQSLDLIISNLSLHWVNDLPGVFGGLKRLLKPNGVFLASLFGEDTLMELKDSLYLAEIEREGGFSPHVSP 224          
The following BLAST results are available for this feature:
BLAST of CF417641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
Y1280_ARATH3.968e-8271.96Uncharacterized protein At1g22800 OS=Arabidopsis t... [more]
CT007_HUMAN2.884e-3241.88Probable methyltransferase C20orf7, mitochondrial ... [more]
CT007_PONAB8.391e-3241.36Probable methyltransferase C20orf7 homolog, mitoch... [more]
CT007_DANRE1.869e-3141.53Probable methyltransferase C20orf7 homolog, mitoch... [more]
CT007_RAT4.604e-3039.79Probable methyltransferase C20orf7 homolog, mitoch... [more]
CT007_MOUSE4.604e-3040.31Probable methyltransferase C20orf7 homolog, mitoch... [more]
CT007_DICDI6.237e-1931.12Probable methyltransferase DDB_G0287769, mitochond... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-571 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417641 ID=CF417641; Name=CF417641; organism=Citrus sinensis; type=EST; length=688bp
AAAATGAGAGCGTTCGGTGCGTTTCAGAGAAGTTCATTGCTATTGAGAAG
AAGAAGAGCAAACAACGAACCGTACGCTCTGGTTCCCTCCGGTTCTTTCT
GTACGGACAATGGATTCGAGACTACTAGCAATGGCAGCTCAAGAGTCAAC
ATCTTCGATCGCCACCTCAAACGCAAACAACGGGATCGAGCTGCATGGTT
GACGCGTCCAAATGACTCTTTTGTAGATGCTGTTGCAGAGAATCTATTAG
ATCGATTGGAGGATTGTAGGAAAACATTTCCTACGGCATTATGTTTAGGG
GGTTCTCTGGAGGCTGTAAGGCGATTGTTACGTGGCCGTGGTGGCATTGA
AAAGCTCATTATGATGGATACTTCATATGATATGCTGAAATTGTGTAAAG
ATGCTCAGCAGGATGCACATAATGATAACATTGAAACATGCTTTGTGGTT
GGGGACGAAGAATTTTTGCCTCTAAAAGAAAGTTCGCTAGATTTGGCGAT
CAGTTGCTTGGGGCTTCATTGGACAAATGATCTCCCAGGGGCTATGATAC
AGTGTAAATTGGCATTGAAGCCGGATGGCCTATTTTTAGGAGCTATTCTT
GGTGGAGAAACCTTGAAGGAACTGAGAATAGCTTGCACTGTTGCTCNAAT
GGAGCGTGAAGGAGGCATCAGTCCACGGGTATCACCTT
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