CF417656

Overview
NameCF417656
Unique NameCF417656
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length327
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6157 contig Csv1_Contig6157:560..885. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF417656 vs. ExPASy Swiss-Prot
Match: RL15B_PICMA (60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.992e-11
Identity = 29/32 (90.62%), Postives = 32/32 (100.00%), Query Frame = 2 
Query:    2 RGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 97
            RGLTSAGKKYRGLRG+GHL+HKARPS+RATWK
Sbjct:  162 RGLTSAGKKYRGLRGRGHLYHKARPSKRATWK 193
[Close]
BLAST of CF417656 vs. ExPASy Swiss-Prot
Match: RL15A_PICMA (60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.992e-11
Identity = 29/32 (90.62%), Postives = 32/32 (100.00%), Query Frame = 2 
Query:    2 RGLTSAGKKYRGLRGKGHLHHKARPSRRATWK 97
            RGLTSAGKKYRGLRG+GHL+HKARPS+RATWK
Sbjct:  162 RGLTSAGKKYRGLRGRGHLYHKARPSKRATWK 193
The following BLAST results are available for this feature:
BLAST of CF417656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RL15B_PICMA1.992e-1190.6360S ribosomal protein L15-2 OS=Picea mariana GN=SB... [more]
RL15A_PICMA1.992e-1190.6360S ribosomal protein L15-1 OS=Picea mariana GN=SB... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-586 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-007_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417656 ID=CF417656; Name=CF417656; organism=Citrus sinensis; type=EST; length=327bp
CCGTGGTCTTACTTCTGCAGGTAAGAAGTACAGAGGCCTACGTGGAAAAG
GACACTTGCACCACAAGGCTCGGCCTTCGCGCAGGGCTACCTGGAAGAGA
AACAATACTCTTTCCCTCCGTCGCTACCGTTGATCATTGTTATGGTTTTG
ATGTTTTATCATCAGTTGAGGGATTTTGTCTGGAGGACATAGTAGTTGCC
ATTTTGAGTCTTTTAGAGATTGAANTACTATGGAACATATCTTATTTTGA
AACCTTACATTCTAAATTAAAACATTTGTGTTTCTTGAGTCTACCGTGAA
TTATAAAAGCCTTAAATGTCTCATACT
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