CF417729
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417729 vs. ExPASy Swiss-Prot
Match: KDM3A_RAT (Lysine-specific demethylase 3A OS=Rattus norvegicus GN=Kdm3a PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 6.114e-29 Identity = 71/165 (43.03%), Postives = 97/165 (58.79%), Query Frame = 1 Query: 58 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYXXXXXXXXXXXXFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQAIKDANSLIPALN*ILSHGNGS 552 E GALW I+ +D K+ +L+K +E +P + PIHDQ +Y +GV+ W Q LG+ VFIPAG PHQV NL SC KVA DFVSPE+V C LT+EFR L + H EDKL++K +I +AV KDA +++ A+N + ++ N S Sbjct: 1054 EKPGALWHIYAAKDTEKIREFLKKVSEEQGQE--NPADH--DPIHDQSWYLDRSLRKRLYQEYGVQGWAIVQFLGDVVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRHLSQTHTNHEDKLQVKNVIYHAV----KDAVAMLKAVNPVWANVNSS 1210
BLAST of CF417729 vs. ExPASy Swiss-Prot
Match: KDM3B_MOUSE (Lysine-specific demethylase 3B OS=Mus musculus GN=Kdm3b PE=1 SV=2) HSP 1 Score: 125.176 bits (313), Expect = 2.323e-28 Identity = 68/145 (46.90%), Postives = 85/145 (58.62%), Query Frame = 1 Query: 58 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYXXXXXXXXXXXXFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQAI 492 E GALW I+ +D K+ LRK +E +P + PIHDQ +Y +GV+ W Q LG+AVFIPAG PHQV NL SC KVA DFVSPE+V C RLT+EFR L H EDKL++K +I +AV A+ Sbjct: 1409 EKPGALWHIYAAKDAEKIRELLRKVGEEQGQE--NPPDH--DPIHDQSWYLDQILRKRLFEEYGVQGWAIVQFLGDAVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFRLTQEFRHLSNTHTNHEDKLQVKNIIYHAVKDAV 1549
BLAST of CF417729 vs. ExPASy Swiss-Prot
Match: KDM3B_HUMAN (Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 2.323e-28 Identity = 68/145 (46.90%), Postives = 85/145 (58.62%), Query Frame = 1 Query: 58 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYXXXXXXXXXXXXFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQAI 492 E GALW I+ +D K+ LRK +E +P + PIHDQ +Y +GV+ W Q LG+AVFIPAG PHQV NL SC KVA DFVSPE+V C RLT+EFR L H EDKL++K +I +AV A+ Sbjct: 1608 EKPGALWHIYAAKDAEKIRELLRKVGEEQGQE--NPPDH--DPIHDQSWYLDQTLRKRLYEEYGVQGWAIVQFLGDAVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFRLTQEFRHLSNTHTNHEDKLQVKNIIYHAVKDAV 1748
BLAST of CF417729 vs. ExPASy Swiss-Prot
Match: KD3AA_XENLA (Lysine-specific demethylase 3A-A OS=Xenopus laevis GN=kdm3a-A PE=2 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 2.323e-28 Identity = 68/145 (46.90%), Postives = 85/145 (58.62%), Query Frame = 1 Query: 58 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYXXXXXXXXXXXXFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQAI 492 E GALW IF +D K+ +L+K +E H +P + PIHDQ +Y GV+ W Q LG+AVFIPAG PHQV NL SC KVA DFVSPE+V C LT+EFR L H EDKL++K +I +AV +I Sbjct: 1178 EKPGALWHIFAAKDTEKIRQFLKKVAEEQGHE--NPPDH--DPIHDQSWYLDNTLRKRLLQEHGVQGWAIVQFLGDAVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSHTHTNHEDKLQVKNVIYHAVKDSI 1318
BLAST of CF417729 vs. ExPASy Swiss-Prot
Match: KDM3A_CHICK (Lysine-specific demethylase 3A OS=Gallus gallus GN=KDM3A PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 5.176e-28 Identity = 66/145 (45.52%), Postives = 85/145 (58.62%), Query Frame = 1 Query: 58 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYXXXXXXXXXXXXFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQAI 492 E GALW I+ +D K+ +L+K +E +PV+ PIHDQ +Y +GV+ W Q LG+ VFIPAG PHQV NL SC KVA DFVSPE+V C LT+EFR L H EDKL++K +I +AV A+ Sbjct: 1172 EKPGALWHIYAAKDTEKIREFLKKVAEEQGQE--NPVDH--DPIHDQSWYLDRSLRKRLHQEYGVQGWAIVQFLGDVVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSHTHTNHEDKLQVKNVIYHAVKDAV 1312
BLAST of CF417729 vs. ExPASy Swiss-Prot
Match: KD3AB_XENLA (Lysine-specific demethylase 3A-B OS=Xenopus laevis GN=kdm3a-B PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 5.176e-28 Identity = 67/145 (46.21%), Postives = 85/145 (58.62%), Query Frame = 1 Query: 58 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYXXXXXXXXXXXXFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQAI 492 E GALW I+ +D K+ +L+K +E H +P + PIHDQ +Y GV+ W Q LG+AVFIPAG PHQV NL SC KVA DFVSPE+V C LT+EFR L H EDKL++K +I +AV +I Sbjct: 1181 EKPGALWHIYAAKDTEKIRQFLKKVAEEEGHE--NPPDH--DPIHDQSWYLDNILRKRLLQEHGVQGWAIVQFLGDAVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFCLTQEFRYLSHTHTNHEDKLQVKNVIYHAVKDSI 1321
BLAST of CF417729 vs. ExPASy Swiss-Prot
Match: KDM3A_MOUSE (Lysine-specific demethylase 3A OS=Mus musculus GN=Kdm3a PE=1 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 8.828e-28 Identity = 65/145 (44.83%), Postives = 85/145 (58.62%), Query Frame = 1 Query: 58 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYXXXXXXXXXXXXFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQAI 492 E GALW I+ +D K+ +L+K +E +P + PIHDQ +Y +GV+ W Q LG+ VFIPAG PHQV NL SC KVA DFVSPE+V C LT+EFR L + H EDKL++K +I +AV A+ Sbjct: 1170 EKPGALWHIYAAKDTEKIREFLKKVSEE--QGQDNPADH--DPIHDQSWYLDRSLRKRLYQEYGVQGWAIVQFLGDVVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSQTHTNHEDKLQVKNVIYHAVKDAV 1310
BLAST of CF417729 vs. ExPASy Swiss-Prot
Match: KDM3A_HUMAN (Lysine-specific demethylase 3A OS=Homo sapiens GN=KDM3A PE=1 SV=3) HSP 1 Score: 123.25 bits (308), Expect = 8.828e-28 Identity = 65/145 (44.83%), Postives = 85/145 (58.62%), Query Frame = 1 Query: 58 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYXXXXXXXXXXXXFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQAI 492 E GALW I+ +D K+ +L+K +E +P + PIHDQ +Y +GV+ W Q LG+ VFIPAG PHQV NL SC KVA DFVSPE+V C LT+EFR L + H EDKL++K +I +AV A+ Sbjct: 1168 EKPGALWHIYAAKDTEKIREFLKKVSEEQGQE--NPADH--DPIHDQSWYLDRSLRKRLHQEYGVQGWAIVQFLGDVVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSQTHTNHEDKLQVKNVIYHAVKDAV 1308
BLAST of CF417729 vs. ExPASy Swiss-Prot
Match: JHD2C_HUMAN (Probable JmjC domain-containing histone demethylation protein 2C OS=Homo sapiens GN=JMJD1C PE=1 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 4.392e-19 Identity = 56/146 (38.36%), Postives = 82/146 (56.16%), Query Frame = 1 Query: 58 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYXXXXXXXXXXXXFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQAIK 495 E GALW I+ +DV K+ +L+K KE + + P PI DQ +Y +GV T Q LG+A+ +PAG HQV+N SC +V DFVSPE++ E LT+E RLL K +DKL++K ++ +AV + ++ Sbjct: 2385 EIPGALWHIYAGKDVDKIREFLQKISKE-QGLEVLPEHD---PIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELRLL-KEEINYDDKLQVKNILYHAVKEMVR 2525
BLAST of CF417729 vs. ExPASy Swiss-Prot
Match: JHD2C_MOUSE (Probable JmjC domain-containing histone demethylation protein 2C OS=Mus musculus GN=Jmjd1c PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 9.784e-19 Identity = 55/146 (37.67%), Postives = 82/146 (56.16%), Query Frame = 1 Query: 58 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYXXXXXXXXXXXXFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQAIK 495 E GALW I+ +DV K+ +L+K KE + + P PI DQ +Y +GV T Q LG+A+ +PAG HQV+N SC +V DFVSPE++ + LT+E RLL K +DKL++K ++ +AV + ++ Sbjct: 2195 EIPGALWHIYAGKDVDKIREFLQKISKE-QGLEVLPEHD---PIRDQSWYVNRKLRQRLLEEYGVRACTLIQFLGDAIVLPAGTLHQVQNFHSCVQVTEDFVSPEHLVQSFHLTQELRLL-KEEINYDDKLQVKNILYHAVKEMVR 2335 The following BLAST results are available for this feature:
BLAST of CF417729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 10
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417729 ID=CF417729; Name=CF417729; organism=Citrus sinensis; type=EST; length=576bpback to top |