CF417729

Overview
NameCF417729
Unique NameCF417729
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig481 contig Csv1_Contig481:1..576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417729 vs. ExPASy Swiss-Prot
Match: KDM3A_RAT (Lysine-specific demethylase 3A OS=Rattus norvegicus GN=Kdm3a PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.114e-29
Identity = 71/165 (43.03%), Postives = 97/165 (58.79%), Query Frame = 1
Query:   58 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYXXXXXXXXXXXXFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQAIKDANSLIPALN*ILSHGNGS 552
            E  GALW I+  +D  K+  +L+K  +E      +P +    PIHDQ +Y            +GV+ W   Q LG+ VFIPAG PHQV NL SC KVA DFVSPE+V  C  LT+EFR L + H   EDKL++K +I +AV    KDA +++ A+N + ++ N S
Sbjct: 1054 EKPGALWHIYAAKDTEKIREFLKKVSEEQGQE--NPADH--DPIHDQSWYLDRSLRKRLYQEYGVQGWAIVQFLGDVVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRHLSQTHTNHEDKLQVKNVIYHAV----KDAVAMLKAVNPVWANVNSS 1210          
BLAST of CF417729 vs. ExPASy Swiss-Prot
Match: KDM3B_MOUSE (Lysine-specific demethylase 3B OS=Mus musculus GN=Kdm3b PE=1 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.323e-28
Identity = 68/145 (46.90%), Postives = 85/145 (58.62%), Query Frame = 1
Query:   58 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYXXXXXXXXXXXXFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQAI 492
            E  GALW I+  +D  K+   LRK  +E      +P +    PIHDQ +Y            +GV+ W   Q LG+AVFIPAG PHQV NL SC KVA DFVSPE+V  C RLT+EFR L   H   EDKL++K +I +AV  A+
Sbjct: 1409 EKPGALWHIYAAKDAEKIRELLRKVGEEQGQE--NPPDH--DPIHDQSWYLDQILRKRLFEEYGVQGWAIVQFLGDAVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFRLTQEFRHLSNTHTNHEDKLQVKNIIYHAVKDAV 1549          
BLAST of CF417729 vs. ExPASy Swiss-Prot
Match: KDM3B_HUMAN (Lysine-specific demethylase 3B OS=Homo sapiens GN=KDM3B PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.323e-28
Identity = 68/145 (46.90%), Postives = 85/145 (58.62%), Query Frame = 1
Query:   58 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYXXXXXXXXXXXXFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQAI 492
            E  GALW I+  +D  K+   LRK  +E      +P +    PIHDQ +Y            +GV+ W   Q LG+AVFIPAG PHQV NL SC KVA DFVSPE+V  C RLT+EFR L   H   EDKL++K +I +AV  A+
Sbjct: 1608 EKPGALWHIYAAKDAEKIRELLRKVGEEQGQE--NPPDH--DPIHDQSWYLDQTLRKRLYEEYGVQGWAIVQFLGDAVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFRLTQEFRHLSNTHTNHEDKLQVKNIIYHAVKDAV 1748          
BLAST of CF417729 vs. ExPASy Swiss-Prot
Match: KD3AA_XENLA (Lysine-specific demethylase 3A-A OS=Xenopus laevis GN=kdm3a-A PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.323e-28
Identity = 68/145 (46.90%), Postives = 85/145 (58.62%), Query Frame = 1
Query:   58 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYXXXXXXXXXXXXFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQAI 492
            E  GALW IF  +D  K+  +L+K  +E  H   +P +    PIHDQ +Y             GV+ W   Q LG+AVFIPAG PHQV NL SC KVA DFVSPE+V  C  LT+EFR L   H   EDKL++K +I +AV  +I
Sbjct: 1178 EKPGALWHIFAAKDTEKIRQFLKKVAEEQGHE--NPPDH--DPIHDQSWYLDNTLRKRLLQEHGVQGWAIVQFLGDAVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSHTHTNHEDKLQVKNVIYHAVKDSI 1318          
BLAST of CF417729 vs. ExPASy Swiss-Prot
Match: KDM3A_CHICK (Lysine-specific demethylase 3A OS=Gallus gallus GN=KDM3A PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.176e-28
Identity = 66/145 (45.52%), Postives = 85/145 (58.62%), Query Frame = 1
Query:   58 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYXXXXXXXXXXXXFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQAI 492
            E  GALW I+  +D  K+  +L+K  +E      +PV+    PIHDQ +Y            +GV+ W   Q LG+ VFIPAG PHQV NL SC KVA DFVSPE+V  C  LT+EFR L   H   EDKL++K +I +AV  A+
Sbjct: 1172 EKPGALWHIYAAKDTEKIREFLKKVAEEQGQE--NPVDH--DPIHDQSWYLDRSLRKRLHQEYGVQGWAIVQFLGDVVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSHTHTNHEDKLQVKNVIYHAVKDAV 1312          
BLAST of CF417729 vs. ExPASy Swiss-Prot
Match: KD3AB_XENLA (Lysine-specific demethylase 3A-B OS=Xenopus laevis GN=kdm3a-B PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.176e-28
Identity = 67/145 (46.21%), Postives = 85/145 (58.62%), Query Frame = 1
Query:   58 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYXXXXXXXXXXXXFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQAI 492
            E  GALW I+  +D  K+  +L+K  +E  H   +P +    PIHDQ +Y             GV+ W   Q LG+AVFIPAG PHQV NL SC KVA DFVSPE+V  C  LT+EFR L   H   EDKL++K +I +AV  +I
Sbjct: 1181 EKPGALWHIYAAKDTEKIRQFLKKVAEEEGHE--NPPDH--DPIHDQSWYLDNILRKRLLQEHGVQGWAIVQFLGDAVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFCLTQEFRYLSHTHTNHEDKLQVKNVIYHAVKDSI 1321          
BLAST of CF417729 vs. ExPASy Swiss-Prot
Match: KDM3A_MOUSE (Lysine-specific demethylase 3A OS=Mus musculus GN=Kdm3a PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 8.828e-28
Identity = 65/145 (44.83%), Postives = 85/145 (58.62%), Query Frame = 1
Query:   58 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYXXXXXXXXXXXXFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQAI 492
            E  GALW I+  +D  K+  +L+K  +E      +P +    PIHDQ +Y            +GV+ W   Q LG+ VFIPAG PHQV NL SC KVA DFVSPE+V  C  LT+EFR L + H   EDKL++K +I +AV  A+
Sbjct: 1170 EKPGALWHIYAAKDTEKIREFLKKVSEE--QGQDNPADH--DPIHDQSWYLDRSLRKRLYQEYGVQGWAIVQFLGDVVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSQTHTNHEDKLQVKNVIYHAVKDAV 1310          
BLAST of CF417729 vs. ExPASy Swiss-Prot
Match: KDM3A_HUMAN (Lysine-specific demethylase 3A OS=Homo sapiens GN=KDM3A PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 8.828e-28
Identity = 65/145 (44.83%), Postives = 85/145 (58.62%), Query Frame = 1
Query:   58 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYXXXXXXXXXXXXFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQAI 492
            E  GALW I+  +D  K+  +L+K  +E      +P +    PIHDQ +Y            +GV+ W   Q LG+ VFIPAG PHQV NL SC KVA DFVSPE+V  C  LT+EFR L + H   EDKL++K +I +AV  A+
Sbjct: 1168 EKPGALWHIYAAKDTEKIREFLKKVSEEQGQE--NPADH--DPIHDQSWYLDRSLRKRLHQEYGVQGWAIVQFLGDVVFIPAGAPHQVHNLYSCIKVAEDFVSPEHVKHCFWLTQEFRYLSQTHTNHEDKLQVKNVIYHAVKDAV 1308          
BLAST of CF417729 vs. ExPASy Swiss-Prot
Match: JHD2C_HUMAN (Probable JmjC domain-containing histone demethylation protein 2C OS=Homo sapiens GN=JMJD1C PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 4.392e-19
Identity = 56/146 (38.36%), Postives = 82/146 (56.16%), Query Frame = 1
Query:   58 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYXXXXXXXXXXXXFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQAIK 495
            E  GALW I+  +DV K+  +L+K  KE + +   P      PI DQ +Y            +GV   T  Q LG+A+ +PAG  HQV+N  SC +V  DFVSPE++ E   LT+E RLL K     +DKL++K ++ +AV + ++
Sbjct: 2385 EIPGALWHIYAGKDVDKIREFLQKISKE-QGLEVLPEHD---PIRDQSWYVNKKLRQRLLEEYGVRTCTLIQFLGDAIVLPAGALHQVQNFHSCIQVTEDFVSPEHLVESFHLTQELRLL-KEEINYDDKLQVKNILYHAVKEMVR 2525          
BLAST of CF417729 vs. ExPASy Swiss-Prot
Match: JHD2C_MOUSE (Probable JmjC domain-containing histone demethylation protein 2C OS=Mus musculus GN=Jmjd1c PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 9.784e-19
Identity = 55/146 (37.67%), Postives = 82/146 (56.16%), Query Frame = 1
Query:   58 ESGGALWDIFRRQDVPKLEAYLRKHFKEFRHVYCSPVEQVIHPIHDQCFYXXXXXXXXXXXXFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVDECLRLTKEFRLLPKNHRAREDKLEIKKMILYAVAQAIK 495
            E  GALW I+  +DV K+  +L+K  KE + +   P      PI DQ +Y            +GV   T  Q LG+A+ +PAG  HQV+N  SC +V  DFVSPE++ +   LT+E RLL K     +DKL++K ++ +AV + ++
Sbjct: 2195 EIPGALWHIYAGKDVDKIREFLQKISKE-QGLEVLPEHD---PIRDQSWYVNRKLRQRLLEEYGVRACTLIQFLGDAIVLPAGTLHQVQNFHSCVQVTEDFVSPEHLVQSFHLTQELRLL-KEEINYDDKLQVKNILYHAVKEMVR 2335          
The following BLAST results are available for this feature:
BLAST of CF417729 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
KDM3A_RAT6.114e-2943.03Lysine-specific demethylase 3A OS=Rattus norvegicu... [more]
KDM3B_MOUSE2.323e-2846.90Lysine-specific demethylase 3B OS=Mus musculus GN=... [more]
KDM3B_HUMAN2.323e-2846.90Lysine-specific demethylase 3B OS=Homo sapiens GN=... [more]
KD3AA_XENLA2.323e-2846.90Lysine-specific demethylase 3A-A OS=Xenopus laevis... [more]
KDM3A_CHICK5.176e-2845.52Lysine-specific demethylase 3A OS=Gallus gallus GN... [more]
KD3AB_XENLA5.176e-2846.21Lysine-specific demethylase 3A-B OS=Xenopus laevis... [more]
KDM3A_MOUSE8.828e-2844.83Lysine-specific demethylase 3A OS=Mus musculus GN=... [more]
KDM3A_HUMAN8.828e-2844.83Lysine-specific demethylase 3A OS=Homo sapiens GN=... [more]
JHD2C_HUMAN4.392e-1938.36Probable JmjC domain-containing histone demethylat... [more]
JHD2C_MOUSE9.784e-1937.67Probable JmjC domain-containing histone demethylat... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-659 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417729 ID=CF417729; Name=CF417729; organism=Citrus sinensis; type=EST; length=576bp
AGAGATGAGATGCAAGGGACTGCATTTACTTGTCCTCATTCGGAAGGGAC
AATGGTGGAATCAGGTGGTGCTCTGTGGGACATTTTTAGGAGGCAGGATG
TTCCCAAGTTAGAGGCATATCTAAGAAAGCACTTCAAAGAATTCAGACAC
GTCTATTGTTCACCAGTAGAACAGGTCATTCATCCAATTCATGACCAGTG
TTTTTATTTAAGTTCAGAGCACAAAAAGAAGTTGAAAGAAGAATTTGGAG
TTGAGCCATGGACATTTGAACAAAAACTTGGAGAAGCTGTATTTATTCCG
GCAGGATGCCCGCACCAAGTTAGGAATCTCAAGTCGTGTACGAAAGTTGC
TGTGGACTTTGTCTCCCCGGAAAATGTTGATGAATGCCTTCGTCTAACCA
AGGAGTTCAGACTTCTTCCAAAGAACCACAGAGCCAGAGAAGACAAACTT
GAAATCAAGAAAATGATACTTTATGCAGTTGCGCAAGCAATTAAAGACGC
AAACAGTTTGATACCTGCTTTGAATTGAATCCTGTCCCATGGAAATGGAA
GCTACTCTCCCATTCACTGCCAAAGT
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