CF417730

Overview
NameCF417730
Unique NameCF417730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length687
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9769 contig Csv1_Contig9769:511..1197. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417730 vs. ExPASy Swiss-Prot
Match: FB233_ARATH (F-box protein At4g12560 OS=Arabidopsis thaliana GN=At4g12560 PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.580e-28
Identity = 78/248 (31.45%), Postives = 125/248 (50.40%), Query Frame = 2
Query:    2 MSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDY---------LEVIIYSLKADTWRRTRE----------FPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGG---FCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCY-YTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDVIEIRN 676
            ++VFNP+T++    P    D      T  + F G GYD+ +DDYK+VR++Q +K+D           EV ++SLK ++W+R             F Y++L  R  GV    +LHW+  R       N+I+ FDL  E+F  V+ P  +  G       +GVL GCL +   Y D+   D+W+MKEY  + SW+K+ +  K      + Y     +SKD  K L+  ++  L W++L+  K   + I++
Sbjct:  108 LAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQ-FKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNY-DQSYVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKMSTLRIKD 353          
BLAST of CF417730 vs. ExPASy Swiss-Prot
Match: FBK50_ARATH (F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.194e-24
Identity = 71/181 (39.23%), Postives = 102/181 (56.35%), Query Frame = 2
Query:    8 VFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADTWRRTREFPYYILD-DRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQ------VGVLRGCLW-INSYY--HDEPRCDIWVMKEYGSQQSWSKL 520
            ++NPTT   K  P+ +     +Y  +NF   GFG+D  TDDYKLV+++ + + D L+  +YSLKAD+WRR     Y   D    +GV   GA+HW+      R  Q +++AFD+++E+F E+  P   +   CS       VG L G L  +NS Y  HD    DIWVM EYG  +SWS++
Sbjct:  184 LYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGLTDDYKLVKLVATSE-DILDASVYSLKADSWRRICNLNYEHNDGSYTSGVHFNGAIHWVFTES--RHNQRVVVAFDIQTEEFREMPVPDEAED--CSHRFSNFVVGSLNGRLCVVNSCYDVHD----DIWVMSEYGEAKSWSRI 355          
BLAST of CF417730 vs. ExPASy Swiss-Prot
Match: FB244_ARATH (F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 68/233 (29.18%), Postives = 112/233 (48.07%), Query Frame = 2
Query:    2 MSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVD-------YLEVIIYSLKADTWRRT----------REFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLH-ETCYYTEAFAFSKDGDKALI-YQHSRCLHWYNLK 643
            +++FNP+T+K    P    D     +T  + F G GYD+  DD+K+VRI+Q    +        +EV ++SLK ++W+R             + Y++L  R  GV +   LHW+  R       N I+ +DL S+    +  P  +       +GVL GC+ +   Y +    D+WV+KEY   +SW+KL    K    E+  +      SKD  K L+   ++  L W++L+
Sbjct:  108 LAIFNPSTRKIHRLPIEPIDFPERDITREYVFYGLGYDSVGDDFKVVRIVQCKLKEGKKKFPCPVEVKVFSLKKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAFNAIIKYDLASDDIGVLSFPQELYIEDNMDIGVLDGCVCL-MCYDEYSHVDVWVLKEYEDYKSWTKLYRVPKPESVESVEFIRPLICSKDRSKILLEINNAANLMWFDLE 339          
BLAST of CF417730 vs. ExPASy Swiss-Prot
Match: FBK67_ARATH (F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18
Identity = 55/145 (37.93%), Postives = 77/145 (53.10%), Query Frame = 2
Query:  101 GFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADTWRRTREFP--YYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGM-KGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCS 526
            GFGYD S DDYK+V ++Q      +E  IYS +   WR    FP    + D   +G++I G L+W A   S       I+++D+  ++F E+  P    +G F   +G LRGCL +  Y       D+WVMKE+G   SWSKL S
Sbjct:  160 GFGYDESEDDYKVVALLQQRHQVKIETKIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLNWAATSSS---SSWTIISYDMSRDEFKELPGPVCCGRGCFTMTLGDLRGCLSMVCYCKG-ANADVWVMKEFGEVYSWSKLLS 300          
BLAST of CF417730 vs. ExPASy Swiss-Prot
Match: FB55_ARATH (F-box protein At1g52490 OS=Arabidopsis thaliana GN=At1g52490 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 53/234 (22.65%), Postives = 110/234 (47.01%), Query Frame = 2
Query:    2 MSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADT--WRRTR-EFPYYILDDRCNGVFIAGALHWLAAR--GSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALI----YQHSRCLHWYNLKDHKQDVIEIRN 676
            ++++NPTT++    P+  S   +     + +F   GYD   ++YK++ ++   +       +++L  D   WR+ R    Y ++     GV I G ++++A R   +   G+  +++FD+KSE+FY V+ P  +    C++ G+      +     +E    +W+M E   +Q WS + +F  + +    +      +  G+   +    Y    C+H+YN+K      +EI +
Sbjct:  167 VTIYNPTTRQCLPLPKIESMVLSPKRHKHCYF---GYDHVMNEYKVLAMVNDSQELTQTFHVFTLGRDCPQWRKIRGNIDYELISVSRAGVCIDGTIYYVAVRRKDNENYGELFMMSFDVKSERFYHVRTPETLWSPKCTERGLFNHQGKLGCISSNENNISMWIM-ENAEKQEWSNI-TFGLLEYPGGDFRTFSGITPAGEIFSMCYPFYNMPLCVHYYNVKQKSYRRVEIES 395          
The following BLAST results are available for this feature:
BLAST of CF417730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
FB233_ARATH5.580e-2831.45F-box protein At4g12560 OS=Arabidopsis thaliana GN... [more]
FBK50_ARATH2.194e-2439.23F-box/kelch-repeat protein At3g06240 OS=Arabidopsi... [more]
FB244_ARATH9.540e-2029.18F-box protein At4g22390 OS=Arabidopsis thaliana GN... [more]
FBK67_ARATH1.055e-1837.93F-box/kelch-repeat protein At3g23880 OS=Arabidopsi... [more]
FB55_ARATH2.782e-1122.65F-box protein At1g52490 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-660 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417730 ID=CF417730; Name=CF417730; organism=Citrus sinensis; type=EST; length=687bp
TATGTCCGTGTTCAACCCAACAACTAAGAAATTCAAACTTTTCCCACAGT
TTTGGAGTGATTGTTATACGGATTACATGACTAATAATTTTCACTTCGAT
GGGTTTGGTTATGATGCTTCTACTGATGACTATAAGTTGGTCAGAATTAT
ACAGTCGTACAAAGTAGATTATCTTGAAGTTATTATTTATAGTTTGAAAG
CTGACACTTGGAGACGGACTCGAGAATTCCCATATTATATTCTTGATGAT
CGATGTAATGGTGTTTTCATTGCCGGTGCTCTGCATTGGTTGGCAGCACG
AGGCTCTGTAAGAACTGGTCAAAATATGATTCTTGCATTTGATCTGAAGA
GTGAGAAATTTTACGAAGTGCAACAGCCGCATGGAATGAAGGGAGGCTTT
TGTAGCCAGGTGGGGGTTTTGCGAGGATGCCTATGGATAAACAGTTATTA
TCATGATGAGCCTCGCTGCGATATATGGGTGATGAAAGAGTATGGATCGC
AACAGTCCTGGTCTAAACTGTGTTCTTTTTCAAAAATGCTTCATGAAACT
TGTTATTATACAGAAGCTTTTGCCTTTTCAAAAGATGGGGATAAAGCTTT
AATTTATCAGCACAGCAGATGTCTGCATTGGTACAATCTAAAAGATCATA
AGCAGGATGTCATTGAGATTCGTAATGGGAATCAAAG
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