CF417730
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF417730 vs. ExPASy Swiss-Prot
Match: FB233_ARATH (F-box protein At4g12560 OS=Arabidopsis thaliana GN=At4g12560 PE=2 SV=2) HSP 1 Score: 124.405 bits (311), Expect = 5.580e-28 Identity = 78/248 (31.45%), Postives = 125/248 (50.40%), Query Frame = 2 Query: 2 MSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDY---------LEVIIYSLKADTWRRTRE----------FPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGG---FCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCY-YTEAFAFSKDGDKALIYQHSRCLHWYNLKDHKQDVIEIRN 676 ++VFNP+T++ P D T + F G GYD+ +DDYK+VR++Q +K+D EV ++SLK ++W+R F Y++L R GV +LHW+ R N+I+ FDL E+F V+ P + G +GVL GCL + Y D+ D+W+MKEY + SW+K+ + K + Y +SKD K L+ ++ L W++L+ K + I++ Sbjct: 108 LAVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQ-FKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNY-DQSYVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKMSTLRIKD 353
BLAST of CF417730 vs. ExPASy Swiss-Prot
Match: FBK50_ARATH (F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.194e-24 Identity = 71/181 (39.23%), Postives = 102/181 (56.35%), Query Frame = 2 Query: 8 VFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADTWRRTREFPYYILD-DRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQ------VGVLRGCLW-INSYY--HDEPRCDIWVMKEYGSQQSWSKL 520 ++NPTT K P+ + +Y +NF GFG+D TDDYKLV+++ + + D L+ +YSLKAD+WRR Y D +GV GA+HW+ R Q +++AFD+++E+F E+ P + CS VG L G L +NS Y HD DIWVM EYG +SWS++ Sbjct: 184 LYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGLTDDYKLVKLVATSE-DILDASVYSLKADSWRRICNLNYEHNDGSYTSGVHFNGAIHWVFTES--RHNQRVVVAFDIQTEEFREMPVPDEAED--CSHRFSNFVVGSLNGRLCVVNSCYDVHD----DIWVMSEYGEAKSWSRI 355
BLAST of CF417730 vs. ExPASy Swiss-Prot
Match: FB244_ARATH (F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3) HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20 Identity = 68/233 (29.18%), Postives = 112/233 (48.07%), Query Frame = 2 Query: 2 MSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVD-------YLEVIIYSLKADTWRRT----------REFPYYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLH-ETCYYTEAFAFSKDGDKALI-YQHSRCLHWYNLK 643 +++FNP+T+K P D +T + F G GYD+ DD+K+VRI+Q + +EV ++SLK ++W+R + Y++L R GV + LHW+ R N I+ +DL S+ + P + +GVL GC+ + Y + D+WV+KEY +SW+KL K E+ + SKD K L+ ++ L W++L+ Sbjct: 108 LAIFNPSTRKIHRLPIEPIDFPERDITREYVFYGLGYDSVGDDFKVVRIVQCKLKEGKKKFPCPVEVKVFSLKKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIAFNAIIKYDLASDDIGVLSFPQELYIEDNMDIGVLDGCVCL-MCYDEYSHVDVWVLKEYEDYKSWTKLYRVPKPESVESVEFIRPLICSKDRSKILLEINNAANLMWFDLE 339
BLAST of CF417730 vs. ExPASy Swiss-Prot
Match: FBK67_ARATH (F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18 Identity = 55/145 (37.93%), Postives = 77/145 (53.10%), Query Frame = 2 Query: 101 GFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADTWRRTREFP--YYILDDRCNGVFIAGALHWLAARGSVRTGQNMILAFDLKSEKFYEVQQPHGM-KGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCS 526 GFGYD S DDYK+V ++Q +E IYS + WR FP + D +G++I G L+W A S I+++D+ ++F E+ P +G F +G LRGCL + Y D+WVMKE+G SWSKL S Sbjct: 160 GFGYDESEDDYKVVALLQQRHQVKIETKIYSTRQKLWRSNTSFPSGVVVADKSRSGIYINGTLNWAATSSS---SSWTIISYDMSRDEFKELPGPVCCGRGCFTMTLGDLRGCLSMVCYCKG-ANADVWVMKEFGEVYSWSKLLS 300
BLAST of CF417730 vs. ExPASy Swiss-Prot
Match: FB55_ARATH (F-box protein At1g52490 OS=Arabidopsis thaliana GN=At1g52490 PE=4 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11 Identity = 53/234 (22.65%), Postives = 110/234 (47.01%), Query Frame = 2 Query: 2 MSVFNPTTKKFKLFPQFWSDCYTDYMTNNFHFDGFGYDASTDDYKLVRIIQSYKVDYLEVIIYSLKADT--WRRTR-EFPYYILDDRCNGVFIAGALHWLAAR--GSVRTGQNMILAFDLKSEKFYEVQQPHGMKGGFCSQVGVLRGCLWINSYYHDEPRCDIWVMKEYGSQQSWSKLCSFSKMLHETCYYTEAFAFSKDGDKALI----YQHSRCLHWYNLKDHKQDVIEIRN 676 ++++NPTT++ P+ S + + +F GYD ++YK++ ++ + +++L D WR+ R Y ++ GV I G ++++A R + G+ +++FD+KSE+FY V+ P + C++ G+ + +E +W+M E +Q WS + +F + + + + G+ + Y C+H+YN+K +EI + Sbjct: 167 VTIYNPTTRQCLPLPKIESMVLSPKRHKHCYF---GYDHVMNEYKVLAMVNDSQELTQTFHVFTLGRDCPQWRKIRGNIDYELISVSRAGVCIDGTIYYVAVRRKDNENYGELFMMSFDVKSERFYHVRTPETLWSPKCTERGLFNHQGKLGCISSNENNISMWIM-ENAEKQEWSNI-TFGLLEYPGGDFRTFSGITPAGEIFSMCYPFYNMPLCVHYYNVKQKSYRRVEIES 395 The following BLAST results are available for this feature:
BLAST of CF417730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF417730 ID=CF417730; Name=CF417730; organism=Citrus sinensis; type=EST; length=687bpback to top |