CF417735

Overview
NameCF417735
Unique NameCF417735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417735_ssr288 microsatellite CF417735_ssr288:288..307. BLAST: Citrus ESTs to TAIR9
Homology
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BLAST of CF417735 vs. ExPASy Swiss-Prot
Match: RK32_CITSI (50S ribosomal protein L32, chloroplastic OS=Citrus sinensis GN=rpl32 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.010e-15
Identity = 39/52 (75.00%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:  502 MAVPKKRTSILKKRIRKNLWKKGGYWXXXXXXXXXXXXXTGNSKSFFCTTNK 657
            MAVPKKRTSILKKRIRKNLWKKGGYW             TGNSKSFFCTTNK
Sbjct:    1 MAVPKKRTSILKKRIRKNLWKKGGYWAALKAFSLAKSLATGNSKSFFCTTNK 52
The following BLAST results are available for this feature:
BLAST of CF417735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RK32_CITSI3.010e-1575.0050S ribosomal protein L32, chloroplastic OS=Citrus... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-665 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417735 ID=CF417735; Name=CF417735; organism=Citrus sinensis; type=EST; length=666bp
GACATTTAATAACCAATTACTAGACAAAAATGGTTGGGTAGATAAAACCT
GTTCGATGTATTTTTCATGGATAAATGTAGCAGGCCGAAAATAGACAGAG
ATAAGGGCGGAAGGGCTTTTTCTTTTTTTTATCAACTTCAACCAATTCTA
TTTCTGTTATATGGCCCAATCCGTCCTATAGATATCGATTTGAATAGGTA
TCTAAGGGTGCCGCCAATAACTCCGGAATACGAATTCCTTTATTCTCCAA
TATTTAGGGAATATAAATTGAAAAAATCCCTTATTCCATTTATTTATTTA
TTTATTTTTTGTTCTAGTAAGATTTTATGCCATTTTTGCATATTTCGATT
TATTTCTTTTTTCTAAAGGTAGTTAGTGTATAAAAAAAAATAAACAGATA
ATGAAATGAACCGTAAAACTAAAAAATGATTTGTTTTAACATTTTAACAA
TAGATGTCTTTCACATCCAATTTGATCAATGACTAACCTTTTCTTTTTTG
AATGGCAGTTCCAAAAAAACGTACTTCTATATTAAAAAAACGTATTCGTA
AAAATCTTTGGAAAAAGGGGGGGTACTGGGCAGCGTTGAAGGCTTTTTCG
TTAGCGAAATCCCTTGCTACTGGGAATTCAAAAAGTTTTTTTTGTACAAC
AAATAAATAATCAAAG
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