CF417740 | Citrus Genome Database

Overview


Name	CF417740
Unique Name	CF417740
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	676

Libraries


Library Name	Type
Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig482	contig	Csv1_Contig482:1..676.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: TBL1R_MOUSE (F-box-like/WD repeat-containing protein TBL1XR1 OS=Mus musculus GN=Tbl1xr1 PE=2 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 9.332e-89
Identity = 146/223 (65.47%), Postives = 182/223 (81.61%), Query Frame = 3

Query:    3 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTY 671
            L  TL +HKGPIF+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS P LDVDW++N +FA+ STD  I+VCK+G++RPIKTF GH  EVN +KWDPTG+LLASCSDD+T KIW+MKQD  VHDL+ H+KEIYTI+WSPTG GTNNPN  L+LASASFDSTV+LWDV+ G  +++L  H+EPVYS+AFSP+G YLASGS DK +HIW+ + G +V +Y
Sbjct:  258 LASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY 480

HSP 2 Score: 73.9442 bits (180), Expect = 8.347e-13
Identity = 41/143 (28.67%), Postives = 73/143 (51.05%), Query Frame = 3

Query:  270 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--------YVHDLRE------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGK 656
            GH+ EV    W+P   LLAS S D TA+IWN+ ++           H +RE       +K++ ++ W+  G+         +LA+ S+D   ++W  + G L  +L  H+ P+++L ++  G ++ S  +DK+  IW    G+
Sbjct:  167 GHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGPTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGT---------LLATGSYDGFARIWTKD-GNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGE 299

[Close]

BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: TBL1R_HUMAN (F-box-like/WD repeat-containing protein TBL1XR1 OS=Homo sapiens GN=TBL1XR1 PE=1 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 9.332e-89
Identity = 146/223 (65.47%), Postives = 182/223 (81.61%), Query Frame = 3

Query:    3 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTY 671
            L  TL +HKGPIF+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS P LDVDW++N +FA+ STD  I+VCK+G++RPIKTF GH  EVN +KWDPTG+LLASCSDD+T KIW+MKQD  VHDL+ H+KEIYTI+WSPTG GTNNPN  L+LASASFDSTV+LWDV+ G  +++L  H+EPVYS+AFSP+G YLASGS DK +HIW+ + G +V +Y
Sbjct:  258 LASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKQDNCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY 480

HSP 2 Score: 73.9442 bits (180), Expect = 8.347e-13
Identity = 41/143 (28.67%), Postives = 73/143 (51.05%), Query Frame = 3

Query:  270 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--------YVHDLRE------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGK 656
            GH+ EV    W+P   LLAS S D TA+IWN+ ++           H +RE       +K++ ++ W+  G+         +LA+ S+D   ++W  + G L  +L  H+ P+++L ++  G ++ S  +DK+  IW    G+
Sbjct:  167 GHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGT---------LLATGSYDGFARIWTKD-GNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGE 299

[Close]

BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: TB1RB_XENLA (F-box-like/WD repeat-containing protein TBL1XR1-B OS=Xenopus laevis GN=tbl1xr1-B PE=2 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 4.631e-88
Identity = 145/223 (65.02%), Postives = 181/223 (81.17%), Query Frame = 3

Query:    3 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTY 671
            L  TL +HKGPIF+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS P LDVDW++N +FA+ STD  I+VCK+G++RPIKTF GH  EVN +KWDPTG+LLASCSDD+T KIW+MK D  VHDL+ H+KEIYTI+WSPTG GTNNPN  L+LASASFDSTV+LWDV+ G  +++L  H+EPVYS+AFSP+G YLASGS DK +HIW+ + G +V +Y
Sbjct:  266 LASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKHDTCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY 488

HSP 2 Score: 73.9442 bits (180), Expect = 8.347e-13
Identity = 41/143 (28.67%), Postives = 73/143 (51.05%), Query Frame = 3

Query:  270 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--------YVHDLRE------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGK 656
            GH+ EV    W+P   LLAS S D TA+IWN+ ++           H +RE       +K++ ++ W+  G+         +LA+ S+D   ++W  + G L  +L  H+ P+++L ++  G ++ S  +DK+  IW    G+
Sbjct:  175 GHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGT---------LLATGSYDGFARIWTKD-GNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGE 307

[Close]

BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: TB1RA_XENLA (F-box-like/WD repeat-containing protein TBL1XR1-A OS=Xenopus laevis GN=tbl1xr1-A PE=1 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 4.631e-88
Identity = 145/223 (65.02%), Postives = 181/223 (81.17%), Query Frame = 3

Query:    3 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTY 671
            L  TL +HKGPIF+LKWNKKG+++L+   DKT I+WD  T E KQQF FHS P LDVDW++N +FA+ STD  I+VCK+G++RPIKTF GH  EVN +KWDPTG+LLASCSDD+T KIW+MK D  VHDL+ H+KEIYTI+WSPTG GTNNPN  L+LASASFDSTV+LWDV+ G  +++L  H+EPVYS+AFSP+G YLASGS DK +HIW+ + G +V +Y
Sbjct:  263 LASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQSNNTFASCSTDMCIHVCKLGQDRPIKTFQGHTNEVNAIKWDPTGNLLASCSDDMTLKIWSMKHDTCVHDLQAHNKEIYTIKWSPTGPGTNNPNANLMLASASFDSTVRLWDVDRGICIHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQTGALVHSY 485

HSP 2 Score: 73.9442 bits (180), Expect = 8.347e-13
Identity = 41/143 (28.67%), Postives = 73/143 (51.05%), Query Frame = 3

Query:  270 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--------YVHDLRE------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGK 656
            GH+ EV    W+P   LLAS S D TA+IWN+ ++           H +RE       +K++ ++ W+  G+         +LA+ S+D   ++W  + G L  +L  H+ P+++L ++  G ++ S  +DK+  IW    G+
Sbjct:  172 GHESEVFICAWNPVSDLLASGSGDSTARIWNLSENSTSGSTQLVLRHCIREGGQDVPSNKDVTSLDWNSEGT---------LLATGSYDGFARIWTKD-GNLASTLGQHKGPIFALKWNKKGNFILSAGVDKTTIIWDAHTGE 304

[Close]

BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: TBL1X_MOUSE (F-box-like/WD repeat-containing protein TBL1X OS=Mus musculus GN=Tbl1x PE=2 SV=2)

HSP 1 Score: 323.553 bits (828), Expect = 6.049e-88
Identity = 144/223 (64.57%), Postives = 180/223 (80.72%), Query Frame = 3

Query:    3 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTY 671
            L  TL +HKGPIF+LKWNKKG+Y+L+   DKT I+WD  T E KQQF FHS P LDVDW+NN +FA+ STD  I+VC++G +RP+KTF GH  EVN +KWDP+G LLASCSDD+T KIW+MKQD  VHDL+ HSKEIYTI+WSPTG  T+NPN  ++LASASFDSTV+LWDVE G  +++L  H+EPVYS+AFSP+G+YLASGS DK +HIW+ + G +V +Y
Sbjct:  271 LASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDVERGVCIHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGSLVHSY 493

HSP 2 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 43/143 (30.07%), Postives = 73/143 (51.05%), Query Frame = 3

Query:  270 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--------YVHDLRE------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGK 656
            GH+ EV    W+P   LLAS S D TA+IWN+ ++           H +RE       +K++ ++ W+  G+         +LA+ S+D   ++W  E G L  +L  H+ P+++L ++  G Y+ S  +DK+  IW    G+
Sbjct:  180 GHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGT---------LLATGSYDGFARIW-TEDGNLASTLGQHKGPIFALKWNKKGNYILSAGVDKTTIIWDAHTGE 312

[Close]

BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: TBL1Y_HUMAN (F-box-like/WD repeat-containing protein TBL1Y OS=Homo sapiens GN=TBL1Y PE=2 SV=1)

HSP 1 Score: 319.316 bits (817), Expect = 1.141e-86
Identity = 143/223 (64.13%), Postives = 179/223 (80.27%), Query Frame = 3

Query:    3 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTY 671
            L  TL +HKGPIF+LKWNKKG+Y+L+   DKT I+WD  T E KQQF FHS P LDVDW+NN++FA+ STD  I+VC++G + P+KTF GH  EVN +KWDP+G LLASCSDD+T KIW+MKQD  VHDL+ HSKEIYTI+WSPTG  T+NPN  ++LASASFDSTV+LWDVE G   ++L  H+EPVYS+AFSP+G+YLASGS DK +HIW+ + G +V +Y
Sbjct:  268 LASTLGQHKGPIFALKWNKKGNYVLSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDHPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQDACVHDLQAHSKEIYTIKWSPTGPATSNPNSSIMLASASFDSTVRLWDVEQGVCTHTLMKHQEPVYSVAFSPDGKYLASGSFDKYVHIWNTQSGSLVHSY 490

HSP 2 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 43/143 (30.07%), Postives = 72/143 (50.35%), Query Frame = 3

Query:  270 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--------YVHDLRE------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGK 656
            GH+ EV    W+P   LLAS S D TA+IWN+ ++           H +RE       +K++ ++ W+  G+         +LA  S+D   ++W  E G L  +L  H+ P+++L ++  G Y+ S  +DK+  IW    G+
Sbjct:  177 GHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNSDGT---------LLAMGSYDGFARIW-TENGNLASTLGQHKGPIFALKWNKKGNYVLSAGVDKTTIIWDAHTGE 309

[Close]

BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: TBL1X_MACFA (F-box-like/WD repeat-containing protein TBL1X OS=Macaca fascicularis GN=TBL1X PE=2 SV=1)

HSP 1 Score: 317.39 bits (812), Expect = 4.335e-86
Identity = 139/223 (62.33%), Postives = 179/223 (80.27%), Query Frame = 3

Query:    3 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTY 671
            L  TL +HKGPIF+LKWN+KG+Y+L+   DKT I+WD  T E KQQF FHS P LDVDW+NN++FA+ STD  I+VC++G +RP+KTF GH  EVN +KWDP+G LLASCSDD+T KIW+MKQ+  +HDL+ H+KEIYTI+WSPTG  T+NPN  ++LASASFDSTV+LWD+E G   ++L  H+EPVYS+AFSP+G YLASGS DK +HIW+ + G +V +Y
Sbjct:  313 LASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNMTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQEVCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKHQEPVYSVAFSPDGRYLASGSFDKCVHIWNTQSGNLVHSY 535

HSP 2 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 43/143 (30.07%), Postives = 73/143 (51.05%), Query Frame = 3

Query:  270 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--------YVHDLRE------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGK 656
            GH+ EV    W+P   LLAS S D TA+IWN+ ++           H +RE       +K++ ++ W+  G+         +LA+ S+D   ++W  E G L  +L  H+ P+++L ++  G Y+ S  +DK+  IW    G+
Sbjct:  222 GHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNTNGT---------LLATGSYDGFARIW-TEDGNLASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGE 354

[Close]

BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: TBL1X_HUMAN (F-box-like/WD repeat-containing protein TBL1X OS=Homo sapiens GN=TBL1X PE=1 SV=3)

HSP 1 Score: 317.39 bits (812), Expect = 4.335e-86
Identity = 139/223 (62.33%), Postives = 179/223 (80.27%), Query Frame = 3

Query:    3 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTY 671
            L  TL +HKGPIF+LKWN+KG+Y+L+   DKT I+WD  T E KQQF FHS P LDVDW+NN +FA+ STD  I+VC++G +RP+KTF GH  EVN +KWDP+G LLASCSDD+T KIW+MKQ+  +HDL+ H+KEIYTI+WSPTG  T+NPN  ++LASASFDSTV+LWD+E G   ++L  H+EPVYS+AFSP+G+YLASGS DK +HIW+ + G +V +Y
Sbjct:  321 LASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGEAKQQFPFHSAPALDVDWQNNTTFASCSTDMCIHVCRLGCDRPVKTFQGHTNEVNAIKWDPSGMLLASCSDDMTLKIWSMKQEVCIHDLQAHNKEIYTIKWSPTGPATSNPNSNIMLASASFDSTVRLWDIERGVCTHTLTKHQEPVYSVAFSPDGKYLASGSFDKCVHIWNTQSGNLVHSY 543

HSP 2 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 43/143 (30.07%), Postives = 73/143 (51.05%), Query Frame = 3

Query:  270 GHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDK--------YVHDLRE------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGK 656
            GH+ EV    W+P   LLAS S D TA+IWN+ ++           H +RE       +K++ ++ W+  G+         +LA+ S+D   ++W  E G L  +L  H+ P+++L ++  G Y+ S  +DK+  IW    G+
Sbjct:  230 GHESEVFICAWNPVSDLLASGSGDSTARIWNLNENSNGGSTQLVLRHCIREGGHDVPSNKDVTSLDWNTNGT---------LLATGSYDGFARIW-TEDGNLASTLGQHKGPIFALKWNRKGNYILSAGVDKTTIIWDAHTGE 362

[Close]

BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: EBI_DROME (F-box-like/WD repeat-containing protein ebi OS=Drosophila melanogaster GN=ebi PE=1 SV=2)

HSP 1 Score: 313.538 bits (802), Expect = 6.259e-85
Identity = 141/223 (63.23%), Postives = 174/223 (78.03%), Query Frame = 3

Query:    3 LKCTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTY 671
            L  TL +HKGPIF+LKWNK G+Y+L+   DKT I+WD  T +  QQF FHS P LDVDW+ N +FA+ STD  I+VC++G N PIKTF GH  EVN +KW P G LLASCSDD+T KIW+M +D+  HDL+ HSKEIYTI+WSPTG GTNNPN  LILASASFDSTV+LWDVE G  +++L  H EPVYS+AFSP+G++LASGS DK +HIWS + G++V +Y
Sbjct:  443 LASTLGQHKGPIFALKWNKCGNYILSAGVDKTTIIWDASTGQCTQQFAFHSAPALDVDWQTNQAFASCSTDQRIHVCRLGVNEPIKTFKGHTNEVNAIKWCPQGQLLASCSDDMTLKIWSMNRDRCCHDLQAHSKEIYTIKWSPTGPGTNNPNTNLILASASFDSTVRLWDVERGSCIHTLTKHTEPVYSVAFSPDGKHLASGSFDKCVHIWSTQTGQLVHSY 665

HSP 2 Score: 72.4034 bits (176), Expect = 2.429e-12
Identity = 42/151 (27.81%), Postives = 77/151 (50.99%), Query Frame = 3

Query:  258 KTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNM-------KQDKYVHDLRE------HSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTY 671
            +   GH+ EV    W+P+  LLAS S D TA+IW+M        Q    H +++       +K++ ++ W+  GS         +LA+ S+D   ++W  + G+L  +L  H+ P+++L ++  G Y+ S  +DK+  IW    G+  + +
Sbjct:  349 RVLRGHESEVFICAWNPSRDLLASGSGDSTARIWDMSDANTNSNQLVLRHCIQKGGAEVPSNKDVTSLDWNCDGS---------LLATGSYDGYARIWKTD-GRLASTLGQHKGPIFALKWNKCGNYILSAGVDKTTIIWDASTGQCTQQF 489

[Close]

BLAST of CF417740 vs. ExPASy Swiss-Prot
Match: YY46_ANASP (Uncharacterized WD repeat-containing protein alr3466 OS=Anabaena sp. (strain PCC 7120) GN=alr3466 PE=4 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.262e-33
Identity = 76/227 (33.48%), Postives = 126/227 (55.51%), Query Frame = 3

Query:    9 CTLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF-------ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKT 668
            CT   H   + S+ +N  G  L +GS DKT  +WD+ + +    F+ H+      +W N+V+F       A+ S D  + + +I  ++ + TF GH   V+ V + P G++LAS SDD T ++W++   + ++    H+  + ++ +SP G+         ILAS S D TV+LW +  GK LY+L GH   V S+ FSP+G  LASGS D+++ +W++  G+ + T
Sbjct: 1236 CTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHT------NWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVGSVIFSPDGA---------ILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYT 1447

HSP 2 Score: 131.339 bits (329), Expect = 4.406e-30
Identity = 74/231 (32.03%), Postives = 127/231 (54.98%), Query Frame = 3

Query:    6 KC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF-------ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTY 671
            KC  TL  H   + ++ ++  G  L +GS D+T  +WD+ + +     + H+       W N+V F       A+ S+D  + + +I  ++ + TF GH   VN V ++P GS+LAS S D T ++W++   K +H  + H+  + ++ ++P GS         +LAS S D TV+LW++   K L++  GH   V S+ FSP+G  LASGS D+++ +WS+  G+ + T+
Sbjct: 1149 KCLYTLQGHTNWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTS------WVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGS---------MLASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTF 1364

HSP 3 Score: 117.087 bits (292), Expect = 8.598e-26
Identity = 66/220 (30.00%), Postives = 116/220 (52.73%), Query Frame = 3

Query:   12 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKT 668
            T   H   + S+ +++ G  L +GS D+T  +WD+ + +  + F+ H+     V +  N++  A+ S+D  + +  I     +  F GH G V  V ++  GS+LA+ S D T ++W++   +  +  + H+  + ++ +S  G+         +LAS S D TV+LWD+  G  LY+L GH   V S+ FSP+G  LASG  D+ + +W +  G  + T
Sbjct:  901 TCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGA---------MLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYT 1111

HSP 4 Score: 115.931 bits (289), Expect = 1.915e-25
Identity = 68/227 (29.96%), Postives = 116/227 (51.10%), Query Frame = 3

Query:   12 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF-------ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTY 671
            TL  +   +  L ++  G  L  GS D+   +WD+ +++     + H+      +W N V+F       A+ S D  + +  I  ++ +    GH   VN V ++P GS LAS S D T ++W +   K +   + H+  + ++ ++P GS         +LAS S D TV+LWD+   K L++  GH   V S+AF+P+G  LASGS D+++ +W +   K + T+
Sbjct: 1111 TLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHT------NWVNAVAFSPDGATLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDGS---------MLASGSSDKTVRLWDISSSKCLHTFQGHTNWVNSVAFNPDGSMLASGSGDQTVRLWEISSSKCLHTF 1322

HSP 5 Score: 114.39 bits (285), Expect = 5.573e-25
Identity = 68/220 (30.91%), Postives = 112/220 (50.91%), Query Frame = 3

Query:   12 TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF-ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKT 668
            T   H   + S+ ++     L +GS D+T  +WD+ + E    F+ H+G    V +  + S  AT S D  + +  I  ++    F GH   V  V +   G++LAS SDD T ++W++     ++ L+ H+  + ++ +SP G+         +LAS   D  V+LWD+  G  LY+L G+   V  L FSPNG  LA+GS D+ + +W +   K + T
Sbjct:  943 TFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQCFYIFQGHTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGA---------MLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYT 1153

HSP 6 Score: 108.227 bits (269), Expect = 3.994e-23
Identity = 61/217 (28.11%), Postives = 107/217 (49.31%), Query Frame = 3

Query:   24 HKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWR-NNVSFATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGKIVKTY 671
            H   + S+ ++  G  L +GS D+T  +WD+ +       + H+     V +  +    A+   D ++ +  I     + T  G+   V  + + P G  LA+ S D   ++W++   K ++ L+ H+  +  + +SP G+          LAS S D TV+LWD+   K LY L GH   V S+ F+P+G  LASGS D+++ +W +   K + T+
Sbjct: 1031 HTSCVRSVVFSSDGAMLASGSDDQTVRLWDISSGNCLYTLQGHTSCVRSVVFSPDGAMLASGGDDQIVRLWDISSGNCLYTLQGYTSWVRFLVFSPNGVTLANGSSDQIVRLWDISSKKCLYTLQGHTNWVNAVAFSPDGA---------TLASGSGDQTVRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTF 1238

HSP 7 Score: 97.0561 bits (240), Expect = 9.208e-20
Identity = 49/154 (31.82%), Postives = 83/154 (53.90%), Query Frame = 3

Query:  195 FATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGK 656
            FAT  +  ++   +    + + T  GH   VN V +   G +LAS SDD T ++W++   + +   + H+  + ++ +SP           L+LAS S D TV+LWD+  G+ LY   GH   VYS+AF+ +G  LA+GS D+++ +W +   +
Sbjct:  879 FATGDSGGIVRFWEAATGKELLTCKGHNSWVNSVGFSQDGKMLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSP---------NSLMLASGSSDQTVRLWDISSGECLYIFQGHTGWVYSVAFNLDGSMLATGSGDQTVRLWDISSSQ 1023

HSP 8 Score: 90.1225 bits (222), Expect = 1.126e-17
Identity = 57/193 (29.53%), Postives = 93/193 (48.19%), Query Frame = 3

Query:    6 KC--TLSKHKGPIFSLKWNKKGDYLLTGSCDKTAIVWDVKTEEWKQQFEFHSGPTLDVDWRNNVSF-------ATSSTDNMIYVCKIGENRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHR 557
            KC  T   H   + S+ ++  G  L +GS D+T  +W + + E    F  H+      +W  +V F       A+ S D  + +  I   + + T  GH   V  + + P G+LLAS SDD T ++WN+   + ++ L  H   + ++ +S  G         LILAS S D T+KLWDV+ G+ + +L   +
Sbjct: 1317 KCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHT------NWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVGSIVFSPDGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDG---------LILASGSDDETIKLWDVKTGECIKTLKSEK 1494

HSP 9 Score: 73.9442 bits (180), Expect = 8.347e-13
Identity = 42/137 (30.66%), Postives = 64/137 (46.72%), Query Frame = 3

Query:  246 NRPIKTFAGHQGEVNCVKWDPTGSLLASCSDDVTAKIWNMKQDKYVHDLREHSKEIYTIRWSPTGSGTNNPNQQLILASASFDSTVKLWDVELGKLLYSLNGHREPVYSLAFSPNGEYLASGSLDKSMHIWSLKEGK 656
            N     F    G V  V + P G L A+       + W     K +   + H+  + ++ +S  G          +LAS S D TV+LWD+  G+ L +  GH   V S+ FSPN   LASGS D+++ +W +  G+
Sbjct:  854 NLAYSVFTKILGSVLTVAFSPDGKLFATGDSGGIVRFWEAATGKELLTCKGHNSWVNSVGFSQDGK---------MLASGSDDQTVRLWDISSGQCLKTFKGHTSRVRSVVFSPNSLMLASGSSDQTVRLWDISSGE 981

The following BLAST results are available for this feature:

BLAST of CF417740 vs. ExPASy Swiss-Prot

BLAST of CF417740 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 466


Match Name	E-value	Identity	Description
TBL1R_MOUSE	9.332e-89	65.47	F-box-like/WD repeat-containing protein TBL1XR1 OS...	[more]
TBL1R_HUMAN	9.332e-89	65.47	F-box-like/WD repeat-containing protein TBL1XR1 OS...	[more]
TB1RB_XENLA	4.631e-88	65.02	F-box-like/WD repeat-containing protein TBL1XR1-B ...	[more]
TB1RA_XENLA	4.631e-88	65.02	F-box-like/WD repeat-containing protein TBL1XR1-A ...	[more]
TBL1X_MOUSE	6.049e-88	64.57	F-box-like/WD repeat-containing protein TBL1X OS=M...	[more]
TBL1Y_HUMAN	1.141e-86	64.13	F-box-like/WD repeat-containing protein TBL1Y OS=H...	[more]
TBL1X_MACFA	4.335e-86	62.33	F-box-like/WD repeat-containing protein TBL1X OS=M...	[more]
TBL1X_HUMAN	4.335e-86	62.33	F-box-like/WD repeat-containing protein TBL1X OS=H...	[more]
EBI_DROME	6.259e-85	63.23	F-box-like/WD repeat-containing protein ebi OS=Dro...	[more]
YY46_ANASP	7.262e-33	33.48	Uncharacterized WD repeat-containing protein alr34...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_115000-670 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_F07 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF417740 ID=CF417740; Name=CF417740; organism=Citrus sinensis; type=EST; length=676bp
ATCTGAAGTGTACCTTGAGTAAACATAAAGGACCCATATTTTCCCTTAAG
TGGAACAAGAAGGGTGATTACCTTCTCACCGGAAGCTGTGATAAAACTGC
AATAGTATGGGATGTGAAGACAGAGGAATGGAAACAGCAATTTGAATTTC
ATTCAGGTCCAACGCTTGATGTTGACTGGCGCAATAATGTTTCATTTGCC
ACAAGCTCGACAGACAACATGATATATGTGTGTAAAATTGGGGAAAACCG
CCCTATTAAAACTTTTGCAGGGCATCAGGGTGAGGTTAACTGTGTTAAAT
GGGATCCAACAGGTTCGTTGTTGGCCTCTTGCTCAGATGACGTCACTGCC
AAGATATGGAACATGAAGCAGGACAAGTATGTTCATGATTTGAGAGAGCA
TTCCAAGGAGATATATACTATCAGATGGAGTCCTACAGGATCAGGGACGA
ATAATCCTAACCAGCAATTGATCCTAGCGAGTGCTTCTTTCGACTCTACA
GTAAAGCTTTGGGATGTAGAGCTAGGGAAACTCCTCTACAGTTTGAATGG
ACACAGGGAACCTGTGTACTCGCTCGCATTTAGCCCTAATGGGGAGTATT
TAGCAAGTGGATCTCTTGATAAATCCATGCACATCTGGTCACTGAAGGAA
GGAAAGATTGTGAAGACGTACACTGG