CF417741

Overview
NameCF417741
Unique NameCF417741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.186e-50
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:  409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684
            YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG
Sbjct:   48 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 139
[Close]
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.186e-50
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:  409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684
            YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG
Sbjct:   48 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 139
[Close]
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.179e-48
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684
            YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+KNGVKFGEAVWFKAG+QIF EG
Sbjct:   49 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEG 140

HSP 2 Score: 72.0182 bits (175), Expect = 3.286e-12
Identity = 35/49 (71.43%), Postives = 41/49 (83.67%), Query Frame = 2 
Query:   17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIW 163
            MATS IQQSAFAGQT L+  NE VRKVG  +GGR++MRRT+KS P+SIW
Sbjct:    1 MATSTIQQSAFAGQTLLKPQNELVRKVG-GNGGRVSMRRTIKSAPESIW 48
[Close]
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.179e-48
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684
            YGPDRPKYLGPFS+Q PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEG
Sbjct:   50 YGPDRPKYLGPFSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEG 141

HSP 2 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 2 
Query:   17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIW 163
            MATSAIQQSAFAGQTAL+QSNE V K+G   GGR++MRRTVKS P SIW
Sbjct:    1 MATSAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIW 49
[Close]
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.717e-48
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684
            YG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEG
Sbjct:   50 YGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEG 141

HSP 2 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 35/49 (71.43%), Postives = 37/49 (75.51%), Query Frame = 2 
Query:   17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIW 163
            MAT AIQQSAF GQ   +  NEF+RKVG    GRITMRRTVKS PQSIW
Sbjct:    1 MATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIW 49
[Close]
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.717e-48
Identity = 88/92 (95.65%), Postives = 90/92 (97.83%), Query Frame = 1 
Query:  409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684
            YG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGVKFGEAVWFKAG+QIFSEG
Sbjct:   50 YGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGSQIFSEG 141

HSP 2 Score: 78.9518 bits (193), Expect = 2.688e-14
Identity = 38/49 (77.55%), Postives = 42/49 (85.71%), Query Frame = 2 
Query:   17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIW 163
            MATSAI+QSAFAGQTAL+  NE VRK+G  +GGR TMRRTVKS PQSIW
Sbjct:    1 MATSAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIW 49
[Close]
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.717e-48
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = 1 
Query:  409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684
            YG DRPK+LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGC+FPE+LSKNGV+FGEAVWFKAGAQIFSEG
Sbjct:   49 YGADRPKFLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEG 140

HSP 2 Score: 72.4034 bits (176), Expect = 2.516e-12
Identity = 37/49 (75.51%), Postives = 42/49 (85.71%), Query Frame = 2 
Query:   17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIW 163
            MA SAIQ SAFAGQTAL+Q +E VRKVGV+D GR +MRRTVK+ PQSIW
Sbjct:    1 MAASAIQSSAFAGQTALKQRDELVRKVGVSD-GRFSMRRTVKAVPQSIW 48
[Close]
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.845e-47
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:  409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684
            YG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGV FGEAVWFKAG+QIFSEG
Sbjct:   50 YGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEG 141

HSP 2 Score: 79.337 bits (194), Expect = 2.058e-14
Identity = 39/49 (79.59%), Postives = 41/49 (83.67%), Query Frame = 2 
Query:   17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIW 163
            MATSAIQQSAFAGQTAL+  NE VRK+G   GGR TMRRTVKS PQSIW
Sbjct:    1 MATSAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIW 49
[Close]
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.845e-47
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:  409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684
            YG DRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPEILSKNGV FGEAVWFKAG+QIFSEG
Sbjct:   22 YGEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVTFGEAVWFKAGSQIFSEG 113
[Close]
BLAST of CF417741 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.845e-47
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:  409 YGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEG 684
            YGPDRPKYLGPFSEQ PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPE+L KNGVKFGEAVWFKAG+QIF+EG
Sbjct:   50 YGPDRPKYLGPFSEQIPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKFGEAVWFKAGSQIFAEG 141

HSP 2 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 35/49 (71.43%), Postives = 38/49 (77.55%), Query Frame = 2 
Query:   17 MATSAIQQSAFAGQTALRQSNEFVRKVGVADGGRITMRRTVKSTPQSIW 163
            MATSAIQQSAF G+T LRQ NEF+RK G     R TMRRTVKS P+SIW
Sbjct:    1 MATSAIQQSAFTGKTGLRQGNEFIRKRGNFGQARFTMRRTVKSAPESIW 49
The following BLAST results are available for this feature:
BLAST of CF417741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
CB23_ORYSJ5.186e-5098.91Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI5.186e-5098.91Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_SILPR2.179e-4894.57Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_GOSHI2.179e-4895.65Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB24_SOLLC3.717e-4895.65Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB23_TOBAC3.717e-4895.65Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_LEMGI3.717e-4894.57Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_PETSP1.845e-4794.57Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB25_SOLLC1.845e-4794.57Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB215_PEA1.845e-4792.39Chlorophyll a-b binding protein 215, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-671 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417741 ID=CF417741; Name=CF417741; organism=Citrus sinensis; type=EST; length=686bp
TTTCGCATAAGAACATATGGCAACCTCTGCTATCCAACAATCAGCATTTG
CTGGCCAGACCGCCTTGAGGCAATCCAATGAGTTTGTCCGCAAGGTTGGA
GTTGCTGACGGTGGCCGTATCACCATGAGGAGGACTGTCAAATCCACTCC
CCAGAGCATCTGGTAACTACATTTTACACATTCTTAGTTGCTAAGCTTGC
TTGTGTTATTGCTTCTTTATCAAGCGTGGCATGCATGTTTGATTTTGGTT
ACCGATATGCCATTAGTTTTCAGCTTATGTAAAAATAAATAAAGAGATCA
GACATAACTTCAATTTAAAACAAAAAGCTCTAGGCGCAAGAAAAATTGTA
ATTCTAGCGTAAGCAGTCTCAAGTATCTGATCAAAGAAACCTGTAATCGA
CAAACAGGTACGGCCCAGACCGCCCAAAGTACTTGGGACCATTCTCTGAG
CAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTATGGCTGGGA
TACCGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGAACCGTGAGC
TAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTTGGCTGCGTC
TTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGAAGCAGTTTG
GTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGG
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