CF417749

Overview
NameCF417749
Unique NameCF417749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF417749_ssr205 microsatellite CF417749_ssr205:205..219. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9675 contig Csv1_Contig9675:53..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF417749 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 6.030e-41
Identity = 94/167 (56.29%), Postives = 113/167 (67.66%), Query Frame = 3
Query:  114 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWXWEVCYAGPCCFGF 590
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE W   +   G     F
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAF 186          
BLAST of CF417749 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.437e-27
Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = 3
Query:  234 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELW 548
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELW
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELW 205          

HSP 2 Score: 34.6538 bits (78), Expect = 7.437e-27
Identity = 16/19 (84.21%), Postives = 17/19 (89.47%), Query Frame = 1
Query:  553 GRFAMLGLVALAFTEFVKG 609
            GRFAMLGLVALA TEF+ G
Sbjct:  207 GRFAMLGLVALAATEFITG 225          
BLAST of CF417749 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.655e-26
Identity = 70/165 (42.42%), Postives = 93/165 (56.36%), Query Frame = 3
Query:   57 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELW 548
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELW
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELW 146          

HSP 2 Score: 32.3426 bits (72), Expect = 1.655e-26
Identity = 15/19 (78.95%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  553 GRFAMLGLVALAFTEFVKG 609
            GRFAMLGLVALA TE + G
Sbjct:  148 GRFAMLGLVALAATEIITG 166          
BLAST of CF417749 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.158e-26
Identity = 53/97 (54.64%), Postives = 67/97 (69.07%), Query Frame = 3
Query:  261 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELW 548
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELW
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELW 141          

HSP 2 Score: 31.5722 bits (70), Expect = 2.158e-26
Identity = 14/19 (73.68%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  553 GRFAMLGLVALAFTEFVKG 609
            GRFAM+GLVALA TE + G
Sbjct:  143 GRFAMIGLVALAATEIITG 161          
BLAST of CF417749 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.594e-25
Identity = 73/188 (38.83%), Postives = 105/188 (55.85%), Query Frame = 3
Query:   45 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWXWEVCYAGPCCFGF 590
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+W       G     F
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAF 187          
BLAST of CF417749 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.891e-13
Identity = 51/107 (47.66%), Postives = 59/107 (55.14%), Query Frame = 3
Query:  237 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAEL 545
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEM 147          

HSP 2 Score: 23.0978 bits (48), Expect = 2.891e-13
Identity = 9/19 (47.37%), Postives = 13/19 (68.42%), Query Frame = 1
Query:  553 GRFAMLGLVALAFTEFVKG 609
            GRFAM+G  A+   E ++G
Sbjct:  150 GRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of CF417749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA6.030e-4156.29Early light-induced protein, chloroplastic OS=Pisu... [more]
ELI5_HORVU7.437e-2753.27High molecular mass early light-inducible protein ... [more]
ELI9_HORVU1.655e-2642.42Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU2.158e-2654.64Low molecular mass early light-inducible protein H... [more]
DS22_CRAPL1.594e-2538.83Desiccation stress protein DSP-22, chloroplastic O... [more]
CBR_DUNBA2.891e-1347.66Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-679 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417749 ID=CF417749; Name=CF417749; organism=Citrus sinensis; type=EST; length=615bp
TCCCGAATTATACTTTGTTCTGTTTTCTACTTCATAAATTAAAAATGGCC
GCATCACTTGCTACTCAATCTATGCTGGCAAGTCCTGTAGCAGCTCGTGT
GACTGGTATCAGGAGATCCGGGGCAAACCAACTTTCCTCCGTCAAGTACT
TGCCTAGTCTGCGTAGAAATGTCAACTTATCCGTGCGCTGCACGGCAGAG
GATGAGCAGCAGCAGCAGCAGAAAGATGATCAACCAACCATACCGAAAGC
TGAGCCTCAGCCACCAAAGAAGCCGCGGATGAGCACGGGGTTCTCTGAGG
TGTTTGCGTTCAGCGGGCCGGCACCGGAGAGGATAAACGGGAGGCTTGCG
ATGATTGGGTTCGTGGCTGCATTGGGGGTGGAGATATCCAAGGGTCAGGA
TGTGTTTGCCCAGTTATCAGACGGTGGGGTTGCCTGGTTCTTGGGGACCA
GTGTTTTGCTCACGGTTGCGTCCCTGGTTCCTTTGTTTAAAGGTGTCAGC
GTGGAGTCTAAATCNGATGGGTTCATGACTTCGGATGCTGAGTTGTGGAA
NTGGGAGGTTTGCTATGCTGGGCCTTGTTGCTTTGGCTTTCACCGAGTTT
GTTAAGGGTGGCACC
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