CF417753

Overview
NameCF417753
Unique NameCF417753
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF417753 vs. ExPASy Swiss-Prot
Match: QORL_ARATH (Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2)

HSP 1 Score: 314.309 bits (804), Expect = 3.769e-85
Identity = 154/226 (68.14%), Postives = 188/226 (83.19%), Query Frame = 3
Query:    6 VKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGQCDKALKAVKEGGRVVSIIGSVTPPASSFVLTSDGSMLEKLNPYLESGKVKAIIDPKGPFPFSQTLEAFSHLESSRATGKV 683
            VK  K GDEVY +++EKAL+ PK+ GSLAEYTAVEE LLALKPKN+ F +AA LPLA ETA EGL R+ FSAGKSILVL GAGGVG++VIQLAKHV+G            L+L+RSLGADLAIDYTKENIEDLP+K+DVVFDA+G CDKA+K +KEGG+VV++ G+VTPP   FV+TS+G +L+KLNPY+ESGKVK ++DPKGPFPFS+  +AFS+LE++ ATGKV
Sbjct:  155 VKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEKLLALKPKNIDFAQAAGLPLAIETADEGLVRTEFSAGKSILVLNGAGGVGSLVIQLAKHVYGASKVAATASTEKLELVRSLGADLAIDYTKENIEDLPDKYDVVFDAIGMCDKAVKVIKEGGKVVALTGAVTPPGFRFVVTSNGDVLKKLNPYIESGKVKPVVDPKGPFPFSRVADAFSYLETNHATGKV 380          
BLAST of CF417753 vs. ExPASy Swiss-Prot
Match: RT4I1_DANRE (Reticulon-4-interacting protein 1 homolog, mitochondrial OS=Danio rerio GN=rtn4ip1 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.613e-19
Identity = 85/267 (31.84%), Postives = 127/267 (47.57%), Query Frame = 3
Query:    6 VKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSA-----FSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDL---PEKFDVVFDAV-GQCDK-ALKAVK--EGGRVVSII----------GSVTPPASSFV--------------------LTSDGSMLEKLNPYLESGKVKAIIDPKGPFPFSQTLEAFSHLESSRATGK 680
            VK FK GD+V+  I       P + GSLAE+  V  N ++ KPK+L   EAAS+P    TA+  +  +       SA K +L+LGG+GGVGT  IQ+ K  +G              L+R LGAD  +DYT   +E      EKFD++ D++ G+ +K AL  +K   G + V++I          G       S V                        GS L++++  +++GKV+ +++    F F+Q  EAF  +E   A GK
Sbjct:  120 VKYFKPGDQVWAAIP------PWKQGSLAEFVVVSGNEVSHKPKSLRHDEAASIPYVAATAWSAIVNTGGLNKDNSAKKRVLILGGSGGVGTFAIQMVK-AWGAHVTVTCSQNAE-RLVRDLGADDVVDYTAGPVEKQLKNLEKFDLILDSIGGETEKWALDLLKPWSGAKFVTLITPFLQNTDRLGLADGMMQSAVTVGCKVVKNLRKGVHYRWGFFAPSGSALDEVSEMVDAGKVRPVVEE--VFSFAQVPEAFQKVEQGHARGK 376          
BLAST of CF417753 vs. ExPASy Swiss-Prot
Match: RT4I1_BOVIN (Reticulon-4-interacting protein 1, mitochondrial OS=Bos taurus GN=RTN4IP1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.972e-17
Identity = 79/271 (29.15%), Postives = 123/271 (45.39%), Query Frame = 3
Query:    6 VKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLER-----SAFSAGKSILVLGGAGGVGTMVIQLAK----HVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIE---DLPEKFDVVFDAVGQCDK--ALKAVKE--GGRVVSII------------------GSVTPPASSF------------VLTSDGSMLEKLNPYLESGKVKAIIDPKGPFPFSQTLEAFSHLESSRATGK 680
            V+ FK GDEV+  +       P + G+L+E+  V  N ++ KP++L+  +AASLP    TA+  + +          GK +L+LG +GGVGT  IQ+ K    HV               +L+R LGAD  IDY   N+E      + FD + D VG   +  ALK +K+  G   V+++                    VT  + +                + G  L+ +   +E+GK++ +I+    FPFS+  EAF  +E   A GK
Sbjct:  134 VRYFKPGDEVWAAVP------PWKQGTLSEFVVVSGNEVSHKPRSLTHTQAASLPYVALTAWSAINKVGGLNDRNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDAS------ELVRKLGADDVIDYKSGNVEAQLKSSKPFDFILDNVGGSTETWALKFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKTLKHFWQGVHYRWAFFMASGPCLDDIAELVEAGKIQPVIEK--TFPFSKVPEAFLKVERGHARGK 390          
BLAST of CF417753 vs. ExPASy Swiss-Prot
Match: RT4I1_MOUSE (Reticulon-4-interacting protein 1, mitochondrial OS=Mus musculus GN=Rtn4ip1 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 9.786e-17
Identity = 82/278 (29.50%), Postives = 125/278 (44.96%), Query Frame = 3
Query:    6 VKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLER-----SAFSAGKSILVLGGAGGVGTMVIQLAK----HVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEK---FDVVFDAVGQCDK--ALKAVKE--GGRVVSIIGSVTPPASSFVLTSD-------------------------------------GSMLEKLNPYLESGKVKAIIDPKGPFPFSQTLEAFSHLESSRATGK 680
            VK F+ GDEV+  +       P + G+L+E+  V  N ++ KPK+L+  +AASLP    TA+  + +          GK  L+LG +GGVGT  IQ+ K    HV               +L+R LGAD  IDYT  ++E+  +    FD + D VG   +  AL  +K+  G   V++   VTP    F+L  D                                     G  L+++   +++GK++ +I+    FPFS+  EAF  +E   A GK
Sbjct:  134 VKYFQPGDEVWAAVP------PWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLSDKNCKGKRALILGASGGVGTFAIQVMKAWGAHVTAVCSKDAS------ELVRKLGADEVIDYTLGSVEEQLKSLKLFDFILDNVGGSTETWALNFLKKWSGATYVTL---VTP----FLLNMDRLGVADGMLQTGVTVGTKALKHLWQGVHYRWAFFMASGPYLDEIAELVDAGKIRPVIE--RTFPFSEVPEAFLKVERGHARGK 390          
BLAST of CF417753 vs. ExPASy Swiss-Prot
Match: RT4I1_HUMAN (Reticulon-4-interacting protein 1, mitochondrial OS=Homo sapiens GN=RTN4IP1 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.857e-16
Identity = 77/271 (28.41%), Postives = 122/271 (45.02%), Query Frame = 3
Query:    6 VKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLER-----SAFSAGKSILVLGGAGGVGTMVIQLAK----HVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEK---FDVVFDAVGQCDK--ALKAVKE--GGRVVSII------------------GSVTPPASSF------------VLTSDGSMLEKLNPYLESGKVKAIIDPKGPFPFSQTLEAFSHLESSRATGK 680
            VK FK GDEV+  +       P + G+L+E+  V  N ++ KPK+L+  +AASLP    TA+  + +          GK +L+LG +GGVGT  IQ+ K    HV               +L+R LGAD  IDY   ++E+  +    FD + D VG   +  A   +K+  G   V+++                    VT  + +                + G  L+ +   +++GK++ +I+    FPFS+  EAF  +E   A GK
Sbjct:  134 VKYFKPGDEVWAAVP------PWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDAS------ELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFFMASGPCLDDIAELVDAGKIRPVIEQ--TFPFSKVPEAFLKVERGHARGK 390          
BLAST of CF417753 vs. ExPASy Swiss-Prot
Match: QORH_ARATH (Putative quinone-oxidoreductase homolog, chloroplastic OS=Arabidopsis thaliana GN=At4g13010 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.546e-14
Identity = 70/252 (27.78%), Postives = 105/252 (41.67%), Query Frame = 3
Query:    6 VKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYE------GLERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEKFDVVFDAVGQCDKAL------KAVKEGGRVVSI-----------IGSVTPPASSFV---LTSDGSMLEKLNPYLESGKVKAIIDPKGPFPFSQTLEAFSHLESSRATGKV 683
            VK FK GD+V   ++          G LAE+    E L   +P+ +   EAA+LP+A  TA +      GL+        +ILV   +GGVG   +QLAK                ++ ++SLGAD  +DY       L       +DAV  C   +        + E G+V+ I           +  +T      V   L      LE +   ++ GKVK +ID K   P S+  +A++      ATGK+
Sbjct:   84 VKNFKAGDKVVAVLSHLG------GGGLAEFAVATEKLTVKRPQEVGAAEAAALPVAGLTALQALTNPAGLKLDGTGKKANILVTAASGGVGHYAVQLAK--LANAHVTATCGARNIEFVKSLGADEVLDYKTPEGAALKSPSGKKYDAVVHCANGIPFSVFEPNLSENGKVIDITPGPNAMWTYAVKKITMSKKQLVPLLLIPKAENLEFMVNLVKEGKVKTVIDSK--HPLSKAEDAWAKSIDGHATGKI 325          
BLAST of CF417753 vs. ExPASy Swiss-Prot
Match: QORH_SPIOL (Quinone-oxidoreductase homolog, chloroplastic OS=Spinacia oleracea GN=QOR PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.323e-13
Identity = 71/252 (28.17%), Postives = 110/252 (43.65%), Query Frame = 3
Query:    6 VKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSA------FSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLP----EKFD-VVFDAVGQCDKALKA-VKEGGRVVSIIGSVTPPAS--------------SFVLTSDGSMLEKLNPYLESGKVKAIIDPKGPFPFSQTLEAFSHLESSRATGKV 683
            V +FK GD+V   ++          G+LAEY   +ENL   +P  +S  E A+LP+A  TA++ L + A          K+IL+   +GGVG   +QLAK   G            LD ++ LGAD  +DY       L     +K+D VV  A G      +  + E G+V+ +    T   +                +L       E +   ++  K+K +ID K   P S+  +A+S +    ATGK+
Sbjct:   84 VNRFKTGDKVVAVLSHAT------GGALAEYAVAKENLTVARPPEVSAAEGAALPVAALTAHQALTQFANIKLDGSGERKNILITAASGGVGHYAVQLAK--LGNTHVTATCGARNLDFVKGLGADEVLDYKTPEGASLTSPSGKKYDYVVHGASGIPWSTFEPNLSEAGKVIDLTPGPTAMMTFAWKKLTFSKKQLVPLLLIPKIPNFEYVVNLVKEKKLKTVIDSK--HPLSKGEDAWSRIMGGHATGKI 325          
BLAST of CF417753 vs. ExPASy Swiss-Prot
Match: ZDH1_STAES (Zinc-type alcohol dehydrogenase-like protein SE_1777 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1777 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 57/180 (31.67%), Postives = 88/180 (48.89%), Query Frame = 3
Query:    3 QVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-------ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKE--------NIEDLPEKFDVVFDAVGQCDKALKAVKEGGRVVSII 497
            QV  F+ GD V+          P +NGS  EY  +EE L+A  P NL   +AASLPL   TAYE L       +  + + GKS+L++ GAGGVG++  Q+AK  +G            +    ++GAD+ +++ K+        +IE +   F   FD     +  +  VK  G + +I+
Sbjct:   75 QVSMFQEGDVVFYS------GSPNQNGSNEEYQLIEEYLVAKAPTNLKSEQAASLPLTGLTAYETLFDVFGISKEPSENKGKSLLIINGAGGVGSIATQIAK-FYGLKVITTASREDTIKWSVNMGADVVLNHKKDLSQQFKDNHIEGVDYIF-CTFDTDMYYEMMVNLVKPRGHIATIV 246          
BLAST of CF417753 vs. ExPASy Swiss-Prot
Match: ZDH1_STAEQ (Zinc-type alcohol dehydrogenase-like protein SERP1785 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1785 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.026e-13
Identity = 57/180 (31.67%), Postives = 88/180 (48.89%), Query Frame = 3
Query:    3 QVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGL-------ERSAFSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKE--------NIEDLPEKFDVVFDAVGQCDKALKAVKEGGRVVSII 497
            QV  F+ GD V+          P +NGS  EY  +EE L+A  P NL   +AASLPL   TAYE L       +  + + GKS+L++ GAGGVG++  Q+AK  +G            +    ++GAD+ +++ K+        +IE +   F   FD     +  +  VK  G + +I+
Sbjct:   75 QVSMFQEGDVVFYS------GSPNQNGSNEEYQLIEEYLVAKAPTNLKSEQAASLPLTGLTAYETLFDVFGISKEPSENKGKSLLIINGAGGVGSIATQIAK-FYGLKVITTASREDTIKWSVNMGADVVLNHKKDLSQQFKDNHIEGVDYIF-CTFDTDMYYEMMVNLVKPRGHIATIV 246          
BLAST of CF417753 vs. ExPASy Swiss-Prot
Match: QORL2_NEMVE (Quinone oxidoreductase-like protein 2 homolog OS=Nematostella vectensis GN=v1g238856 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.462e-12
Identity = 69/261 (26.44%), Postives = 115/261 (44.06%), Query Frame = 3
Query:    3 QVKKFKVGDEVYGDINEKALDHPKRNGSLAEYTAVEENLLALKPKNLSFVEAASLPLATETAYEGLERSA-FSAGKSILVLGGAGGVGTMVIQLAKHVFGXXXXXXXXXXXXLDLLRSLGADLAIDYTKENIEDLPEKF------DVVFDAVG-----QCDKALKAVKEGGRVVSI---IGSVTPPASSFVLTSDGS-------------------MLEKLNPYLESGKVKAIIDPKGPFPFSQTLEAFSHLESSRATGKV 683
            +V     GD V G   +         G +AE   + +  L   P +LSF +AA+L ++  TAY GL+  A    G+++LV   AG +G   + LA +VFG            L +++ +GA   IDYT+ENI+D  ++       +V+ +AVG     QC   LK +   G ++ +    G +    ++ +L  + S                    ++K   Y ++GK+K        F   +  EAF  +   ++TGKV
Sbjct:  112 KVTSLSKGDRVLGVCGQ--------GGGMAEECVLPQTALWKIPSSLSFTQAAALAISYGTAYIGLKHKANLQPGQTVLVTAAAGALGLASVDLAANVFG-AKVIGASRKEKLVIVQEIGATATIDYTRENIKDKVKELTDGHGANVIMEAVGGDVFKQC---LKCIAWNGYIIPVGFASGEIPQIPANILLVKNCSAVGLYWGAHSKHDPQLLRESVDKTLEYFKNGKLKGPY-ISASFGLDKVNEAFQMILQRKSTGKV 359          
The following BLAST results are available for this feature:
BLAST of CF417753 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
QORL_ARATH3.769e-8568.14Quinone oxidoreductase-like protein At1g23740, chl... [more]
RT4I1_DANRE1.613e-1931.84Reticulon-4-interacting protein 1 homolog, mitocho... [more]
RT4I1_BOVIN1.972e-1729.15Reticulon-4-interacting protein 1, mitochondrial O... [more]
RT4I1_MOUSE9.786e-1729.50Reticulon-4-interacting protein 1, mitochondrial O... [more]
RT4I1_HUMAN4.857e-1628.41Reticulon-4-interacting protein 1, mitochondrial O... [more]
QORH_ARATH4.546e-1427.78Putative quinone-oxidoreductase homolog, chloropla... [more]
QORH_SPIOL1.323e-1328.17Quinone-oxidoreductase homolog, chloroplastic OS=S... [more]
ZDH1_STAES5.026e-1331.67Zinc-type alcohol dehydrogenase-like protein SE_17... [more]
ZDH1_STAEQ5.026e-1331.67Zinc-type alcohol dehydrogenase-like protein SERP1... [more]
QORL2_NEMVE1.462e-1226.44Quinone oxidoreductase-like protein 2 homolog OS=N... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-683 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-008_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF417753 ID=CF417753; Name=CF417753; organism=Citrus sinensis; type=EST; length=685bp
GCCAAGTAAAGAAGTTTAAGGTAGGAGATGAAGTTTATGGAGATATAAAT
GAGAAAGCATTGGATCATCCTAAACGAAATGGCTCCTTAGCTGAGTACAC
TGCTGTTGAAGAGAATCTATTGGCTCTCAAGCCCAAAAACCTGAGTTTTG
TTGAGGCTGCAAGCCTTCCCCTTGCCACTGAGACTGCCTATGAAGGTCTT
GAACGTTCTGCCTTTTCCGCCGGTAAATCTATTCTTGTTTTAGGTGGAGC
TGGTGGAGTTGGCACCATGGTGATTCAGCTAGCTAAGCATGTCTTTGGTG
CATCTAAAGTAGCAGCTACCTCTAGCACTGCAAAGCTGGACTTGTTAAGG
AGCTTGGGTGCTGATTTGGCTATTGATTACACCAAGGAAAACATTGAAGA
CCTGCCTGAGAAATTTGATGTAGTGTTTGATGCAGTTGGGCAATGTGACA
AGGCATTGAAGGCAGTGAAAGAAGGCGGGAGAGTCGTTTCAATTATTGGT
TCAGTAACTCCACCAGCTTCCTCGTTTGTGTTGACTTCGGATGGATCTAT
GTTGGAGAAATTAAATCCTTATTTGGAGAGTGGGAAAGTGAAAGCAATTA
TTGACCCAAAAGGTCCGTTTCCATTCTCTCAGACCTTAGAAGCATTTTCC
CACCTTGAATCCAGCAGAGCTACTGGAAAAGTTGT
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