CF418023

Overview
NameCF418023
Unique NameCF418023
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7541 contig Csv1_Contig7541:28..641. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF418023 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.377e-29
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 1
Query:    1 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 228
            +GVGV SIGK LVNSKE  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+AN DA+ +G FYG
Sbjct:  362 TGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of CF418023 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 3.795e-27
Identity = 57/75 (76.00%), Postives = 69/75 (92.00%), Query Frame = 1
Query:    1 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 225
            SGVGV + GK LVNSKE  PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAALG ANEDAI+SG+F+
Sbjct:  364 SGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of CF418023 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.195e-26
Identity = 56/75 (74.67%), Postives = 68/75 (90.67%), Query Frame = 1
Query:    1 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 225
            SGVGV S+GK LVNSKE  PTF+QP+MT++KLL Y +M+VQEQENVKRVQLAD+YL+EAALG ANEDAI+SG+F+
Sbjct:  366 SGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440          
BLAST of CF418023 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.195e-26
Identity = 56/74 (75.68%), Postives = 67/74 (90.54%), Query Frame = 1
Query:    1 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNF 222
            S VGV +IGK LVNSKE  PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAALG+AN+DAI+ G F
Sbjct:  362 SEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435          
BLAST of CF418023 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.195e-26
Identity = 57/76 (75.00%), Postives = 66/76 (86.84%), Query Frame = 1
Query:    1 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 228
            S VGV +IGK LVNSKE  P+FEQP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAALG+AN DAI+ G FYG
Sbjct:  362 SEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437          
BLAST of CF418023 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 9.346e-26
Identity = 54/74 (72.97%), Postives = 68/74 (91.89%), Query Frame = 1
Query:    7 VGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 228
            +GV +I K LVNS+E  PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAALG+AN+DA+++G FYG
Sbjct:  351 IGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424          
BLAST of CF418023 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.639e-25
Identity = 52/76 (68.42%), Postives = 65/76 (85.53%), Query Frame = 1
Query:    1 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 228
            + VGV ++GK LVNSK+  P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+AN+DAI  G F+G
Sbjct:  360 NSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435          

HSP 2 Score: 67.0106 bits (162), Expect = 8.493e-11
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 2
Query:  365 GKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 478
            GKAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct:  435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          
BLAST of CF418023 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.058e-25
Identity = 54/75 (72.00%), Postives = 64/75 (85.33%), Query Frame = 1
Query:    1 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 225
            SG G+  IG  L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAALG+AN DAI +G+F+
Sbjct:  366 SGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
BLAST of CF418023 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.033e-24
Identity = 54/75 (72.00%), Postives = 67/75 (89.33%), Query Frame = 1
Query:    1 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFY 225
            S  GV +I + LVNSKE  PTFEQP++T+EKLLEYG+M+V EQENVKRVQLADKYL+EAALGEANEDA+++G+F+
Sbjct:  358 SETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432          
BLAST of CF418023 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.763e-24
Identity = 53/76 (69.74%), Postives = 67/76 (88.16%), Query Frame = 1
Query:    1 SGVGVGSIGKSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANEDAIQSGNFYG 228
            S  GV +IGK LVNS+E  P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+AN DA+++G+FYG
Sbjct:  353 SDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 428          
The following BLAST results are available for this feature:
BLAST of CF418023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RCA_MALDO2.377e-2981.58Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU3.795e-2776.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU4.195e-2674.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR4.195e-2675.68Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR4.195e-2675.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU9.346e-2672.97Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL4.639e-2568.42Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC6.058e-2572.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE1.033e-2472.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ1.763e-2469.74Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-953 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418023 ID=CF418023; Name=CF418023; organism=Citrus sinensis; type=EST; length=613bp
TCTGGTGTTGGTGTTGGAAGCATTGGCAAGAGCCTTGTGAACTCAAAGGA
AGCAGCCCCAACATTCGAGCAACCAAGGATGACAATGGAGAAGCTGCTCG
AGTACGGAAACATGATTGTGCAAGAGCAAGAGAATGTGAAGAGAGTTCAG
TTGGCTGACAAGTATTTGAGTGAGGCCGCTCTTGGTGAAGCTAATGAAGA
TGCTATTCAGAGTGGAAATTTCTATGGTTAGCCCCCTTGATCCTAGCTAA
GAGGCCTTGATGGGAGGTTTGCTACTAGCATTCTACCAAATTTAGAGCAT
AAATTGAGATCAAATGAAGAATAACAAAGCATTTTTTTTTTTGGGGGTAA
ATTTTGCTGTTGCAGGCAAAGCAGCCCAGCAAATGAATGTTCCAGTTCCT
GAAGGATGTACTGATCCTACTGCAGAAAACTTTGATCCAACTGCAAGAAG
TGATGATGGAAGCTGCCAATACACGCTTTAGGCCTTGTTTCTAAGGGTTG
AGAAGTGTCGCACTTTGCTTAGGATGTGAGATATTCAAATAATATTGTTG
CATTTTCATTTCTTTTTTNATCAGAAAGAATCCTCTAATTTTGTGTTAAA
AAAAAAAAAAAAA
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