CF418028

Overview
NameCF418028
Unique NameCF418028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13046 contig Csv1_Contig13046:622..1274. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL9_ARATH (Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BGAL9 PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.110e-90
Identity = 150/217 (69.12%), Postives = 175/217 (80.65%), Query Frame = 3
Query:    6 QIYGIEENE-AEWTDLTRDGIPSTFTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEAC 653
            +IY +E NE AEW+ L  D  PS F WYKTYFD P G DPV L+L SMG+GQAWVNG HIGRYW +++ K GC  TCDYRGAYNSDKCTTNCG PTQT YHVPRSWL+ S+NLLV+FEETGGNPF+ISVK  +  I+C QVSESHYPP+RKWS    ++G +SIN +APE+HLHC+DG++ISSIEFASYGTP+G C  FS G CHA  SLS+VSEAC
Sbjct:  627 KIYTVEHNEKAEWSTLETDASPSIFMWYKTYFDPPAGTDPVVLNLESMGRGQAWVNGQHIGRYWNIISQKDGCDRTCDYRGAYNSDKCTTNCGKPTQTRYHVPRSWLKPSSNLLVLFEETGGNPFKISVKTVTAGILCGQVSESHYPPLRKWSTPDYINGTMSINSVAPEVHLHCEDGHVISSIEFASYGTPRGSCDGFSIGKCHASNSLSIVSEAC 843          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGA15_ORYSJ (Beta-galactosidase 15 OS=Oryza sativa subsp. japonica GN=Os12g0429200 PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 2.591e-72
Identity = 119/207 (57.49%), Postives = 152/207 (73.43%), Query Frame = 3
Query:   33 AEWTDLTRDGIPSTFTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEAC 653
            A W+ + +D +   FTWYKT F  P G DPVA+DLGSMGKGQAWVNGH IGRYW++VAP+ GC  +C Y GAYN  KC +NCG PTQ WYH+PR WL+ S+NLLV+FEETGG+P  IS++    + VC ++SE++YPP+  WS+  S  G+ S+N   PE+ L C DG++IS I FASYGTP G C  FS+GNCHA  +L +V+EAC
Sbjct:  671 AGWSRMQKDSV-QPFTWYKTMFSTPKGTDPVAIDLGSMGKGQAWVNGHLIGRYWSLVAPESGCSSSCYYPGAYNERKCQSNCGMPTQNWYHIPREWLKESDNLLVLFEETGGDPSLISLEAHYAKTVCSRISENYYPPLSAWSHLSS--GRASVNAATPELRLQCDDGHVISEITFASYGTPSGGCLNFSKGNCHASSTLDLVTEAC 874          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL8_ARATH (Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BGAL8 PE=2 SV=2)

HSP 1 Score: 211.846 bits (538), Expect = 2.436e-54
Identity = 101/212 (47.64%), Postives = 138/212 (65.09%), Query Frame = 3
Query:   27 NEAEWTDLTRDGIPSTFTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYW-TVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRST-RIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQ-DGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEAC 653
            + +EW   +         WYKT FDAP G +PVA+D    GKG AWVNG  IGRYW T +A  GGC ++CDYRG+Y ++KC  NCG P+QT YHVPRSWL+ S N+LV+FEE GG+P +IS   + T   +C  VS+SH PPV  W++   +  +   N+  P + L C     +I SI+FAS+GTP+G C  F++G+C++  SLS+V +AC
Sbjct:  611 DSSEWVSKSPLPTKQPLIWYKTTFDAPSGSEPVAIDFTGTGKGIAWVNGQSIGRYWPTSIAGNGGCTESCDYRGSYRANKCLKNCGKPSQTLYHVPRSWLKPSGNILVLFEEMGGDPTQISFATKQTGSNLCLTVSQSHPPPVDTWTSDSKISNR---NRTRPVLSLKCPISTQVIFSIKFASFGTPKGTCGSFTQGHCNSSRSLSLVQKAC 819          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL3_ARATH (Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BGAL3 PE=1 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.089e-54
Identity = 100/196 (51.02%), Postives = 124/196 (63.27%), Query Frame = 3
Query:   66 PSTFTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEAC 653
            P   TW+KTYFDAP+G +P+ALD+  MGKGQ WVNG  IGRYWT  A  G C   C Y G Y  +KC T CG PTQ WYHVPR+WL+ S NLLVIFEE GGNP  +S+  RS   VC +VSE H P ++ W       G+       P++HL C  G  I+SI+FAS+GTP G C  + +G CHA  S +++   C
Sbjct:  623 PQPLTWHKTYFDAPEGNEPLALDMEGMGKGQIWVNGESIGRYWTAFAT-GDCSH-CSYTGTYKPNKCQTGCGQPTQRWYHVPRAWLKPSQNLLVIFEELGGNPSTVSLVKRSVSGVCAEVSEYH-PNIKNWQIESYGKGQ---TFHRPKVHLKCSPGQAIASIKFASFGTPLGTCGSYQQGECHAATSYAILERKC 812          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL6_ORYSJ (Beta-galactosidase 6 OS=Oryza sativa subsp. japonica GN=Os03g0255100 PE=1 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 3.890e-52
Identity = 99/217 (45.62%), Postives = 132/217 (60.83%), Query Frame = 3
Query:    9 IYGIEENEAEWTDLTRDGIPSTFTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYW-TVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHC-QDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEAC 653
            +Y   E   EW             WYKT F AP G DPVA+D   MGKG+AWVNG  IGRYW T +AP+ GC ++C+YRGAY+S+KC   CG P+QT YHVPRS+LQ  +N LV+FE+ GG+P  IS   R T  +C  VSE H   +  W     +  + +     P + L C ++G +IS+I+FAS+GTP G C  ++ G C +  +L+VV EAC
Sbjct:  614 LYNPSEASPEWVSDNAYPTNQPLIWYKTKFTAPAGDDPVAIDFTGMGKGEAWVNGQSIGRYWPTNLAPQSGCVNSCNYRGAYSSNKCLKKCGQPSQTLYHVPRSFLQPGSNDLVLFEQFGGDPSMISFTTRQTSSICAHVSEMHPAQIDSW-----ISPQQTSQTQGPALRLECPREGQVISNIKFASFGTPSGTCGNYNHGECSSSQALAVVQEAC 825          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL3_ORYSJ (Beta-galactosidase 3 OS=Oryza sativa subsp. japonica GN=Os01g0875500 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.301e-51
Identity = 95/195 (48.72%), Postives = 122/195 (62.56%), Query Frame = 3
Query:   78 TWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGG-CQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPV--RKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEAC 653
            TWYK   D P G DPV LD+ SMGKG AW+NG+ IGRYW  ++P    C  +CDYRG ++ +KC   CG PTQ WYHVPRSW   S N LVIFEE GG+P +I+   R+   VC  VSE HYP +    W  +   DG     + A ++ L C  G  ISS++F S+G P G C+ + +G+CH P S+SVV +AC
Sbjct:  629 TWYKVNVDVPQGDDPVGLDMQSMGKGLAWLNGNAIGRYWPRISPVSDRCTSSCDYRGTFSPNKCRRGCGQPTQRWYHVPRSWFHPSGNTLVIFEEKGGDPTKITFSRRTVASVCSFVSE-HYPSIDLESWDRNTQNDG-----RDAAKVQLSCPKGKSISSVKFVSFGNPSGTCRSYQQGSCHHPNSISVVEKAC 817          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL2_ORYSJ (Beta-galactosidase 2 OS=Oryza sativa subsp. japonica GN=Os01g0580200 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.581e-51
Identity = 96/192 (50.00%), Postives = 119/192 (61.98%), Query Frame = 3
Query:   78 TWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEAC 653
            TWYK +F+APDG +P+ALD+ SMGKGQ W+NG  IGRYW      G C  TCDYRG Y+  KC TNCG+ +Q WYHVPRSWL  + NLLVIFEE GG+P  IS+  RS   VC  VSE   P ++ W        K         +HL C +G  I+ I+FAS+GTPQG C  ++ G CHA  S  +  + C
Sbjct:  613 TWYKAFFNAPDGDEPLALDMSSMGKGQIWINGQGIGRYWPGYKASGNC-GTCDYRGEYDETKCQTNCGDSSQRWYHVPRSWLSPTGNLLVIFEEWGGDPTGISMVKRSIGSVCADVSE-WQPSMKNWHTKDYEKAK---------VHLQCDNGQKITEIKFASFGTPQGSCGSYTEGGCHAHKSYDIFWKNC 793          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL5_ORYSJ (Beta-galactosidase 5 OS=Oryza sativa subsp. japonica GN=Os03g0165400 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.210e-50
Identity = 96/192 (50.00%), Postives = 125/192 (65.10%), Query Frame = 3
Query:   81 WYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWS-NSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEAC 653
            WY+ YFD P G +P+ALD+GSMGKGQ W+NG  IGRYWT  A +G C+  C Y G+Y + KC   CG PTQ WYHVPRSWLQ + NLLV+FEE GG+  +I++  R+   VC  VSE H P ++ W   SY   G+   +    ++HL C  G  IS+I+FAS+GTP G C  F +G CH+  S SV+ + C
Sbjct:  621 WYRAYFDTPSGDEPLALDMGSMGKGQIWINGQSIGRYWTAYA-EGDCKG-CHYTGSYRAPKCQAGCGQPTQRWYHVPRSWLQPTRNLLVVFEELGGDSSKIALAKRTVSGVCADVSEYH-PNIKNWQIESY---GEPEFH--TAKVHLKCAPGQTISAIKFASFGTPLGTCGTFQQGECHSINSNSVLEKKC 804          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL_SOLLC (Beta-galactosidase OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.082e-49
Identity = 92/206 (44.66%), Postives = 123/206 (59.71%), Query Frame = 3
Query:   36 EWTDLTRDGIPSTFTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEAC 653
            EW + +        +WYKT F+APDG +P+ALD+ +MGKGQ W+NG  +GR+W      G C   C+Y G ++  KC TNCG  +Q WYHVPRSWL  + NLLV+FEE GG+P+ I++  R    VC  + E   P +  W     V GK     + P+ HL C  G  ISSI+FAS+GTP+G C  F +G+CHAP S     + C
Sbjct:  601 EWVEGSLVAQKQPLSWYKTTFNAPDGNEPLALDMNTMGKGQVWINGQSLGRHWPAYKSSGSCS-VCNYTGWFDEKKCLTNCGEGSQRWYHVPRSWLYPTGNLLVVFEEWGGDPYGITLVKREIGSVCADIYE-WQPQLLNWQR--LVSGKFD-RPLRPKAHLKCAPGQKISSIKFASFGTPEGVCGNFQQGSCHAPRSYDAFKKNC 801          
BLAST of CF418028 vs. ExPASy Swiss-Prot
Match: BGAL_ASPOF (Beta-galactosidase OS=Asparagus officinalis PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.025e-49
Identity = 94/202 (46.53%), Postives = 122/202 (60.40%), Query Frame = 3
Query:   27 NEAEWTDLTRDGIPSTFTWYKTYFDAPDGIDPVALDLGSMGKGQAWVNGHHIGRYWTVVAPKGGCQDTCDYRGAYNSDKCTTNCGNPTQTWYHVPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKW-SNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMS 629
            +  EW + ++       TWYKT+F+AP G +P+ALD+ +MGKGQ W+NG  IGRYW      G C  +CDYRG YN  KC +NCG  +Q WYHVPRSWL  + N LV+ EE GG+P  IS+  RS   VC +V E   P +  W + +Y            P++HL C  G  +S I+FAS+GTPQG C  FS G+CHA  S
Sbjct:  599 SNVEWGEASQK---QPLTWYKTFFNAPPGNEPLALDMNTMGKGQIWINGQSIGRYWPAYKASGSC-GSCDYRGTYNEKKCLSNCGEASQRWYHVPRSWLIPTGNFLVVLEEWGGDPTGISMVKRSVASVCAEVEELQ-PTMDNWRTKAYG----------RPKVHLSCDPGQKMSKIKFASFGTPQGTCGSFSEGSCHAHKS 785          
The following BLAST results are available for this feature:
BLAST of CF418028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
BGAL9_ARATH2.110e-9069.12Beta-galactosidase 9 OS=Arabidopsis thaliana GN=BG... [more]
BGA15_ORYSJ2.591e-7257.49Beta-galactosidase 15 OS=Oryza sativa subsp. japon... [more]
BGAL8_ARATH2.436e-5447.64Beta-galactosidase 8 OS=Arabidopsis thaliana GN=BG... [more]
BGAL3_ARATH7.089e-5451.02Beta-galactosidase 3 OS=Arabidopsis thaliana GN=BG... [more]
BGAL6_ORYSJ3.890e-5245.62Beta-galactosidase 6 OS=Oryza sativa subsp. japoni... [more]
BGAL3_ORYSJ4.301e-5148.72Beta-galactosidase 3 OS=Oryza sativa subsp. japoni... [more]
BGAL2_ORYSJ9.581e-5150.00Beta-galactosidase 2 OS=Oryza sativa subsp. japoni... [more]
BGAL5_ORYSJ6.210e-5050.00Beta-galactosidase 5 OS=Oryza sativa subsp. japoni... [more]
BGAL_SOLLC3.082e-4944.66Beta-galactosidase OS=Solanum lycopersicum PE=1 SV... [more]
BGAL_ASPOF4.025e-4946.53Beta-galactosidase OS=Asparagus officinalis PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-958 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418028 ID=CF418028; Name=CF418028; organism=Citrus sinensis; type=EST; length=653bp
TCCAGCAGATATACGGTATAGAAGAAAATGAGGCAGAATGGACTGATTTG
ACACGTGATGGTATTCCATCCACCTTCACCTGGTACAAGACATATTTTGA
CGCTCCTGATGGGATAGACCCAGTGGCTCTCGATTTGGGAAGCATGGGAA
AGGGCCAGGCTTGGGTCAATGGCCACCATATAGGAAGATACTGGACTGTG
GTTGCCCCGAAAGGTGGATGTCAAGATACATGTGATTACCGTGGAGCCTA
CAATTCCGATAAGTGCACTACAAACTGTGGGAACCCTACTCAAACCTGGT
ACCATGTGCCACGGTCATGGTTGCAAGCATCAAATAATTTACTCGTCATC
TTTGAGGAAACAGGAGGCAATCCGTTTGAGATTTCAGTCAAGTTGCGTTC
AACTCGAATTGTCTGTGAACAAGTTTCAGAGTCCCACTACCCACCTGTTA
GGAAGTGGTCCAATTCATATTCTGTTGATGGAAAATTGTCGATAAATAAG
ATGGCACCAGAAATGCATTTGCATTGTCAAGATGGATATATTATCTCTTC
CATAGAATTTGCTAGCTATGGTACCCCTCAGGGTCGCTGCCAGAAATTTT
CAAGGGGCAACTGCCATGCGCCCATGTCATTATCCGTGGTGTCTGAGGCT
TGC
back to top