CF418039

Overview
NameCF418039
Unique NameCF418039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1118 contig Csv1_Contig1118:362..1045. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF418039 vs. ExPASy Swiss-Prot
Match: SC61A_DICDI (Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 9.606e-81
Identity = 146/195 (74.87%), Postives = 167/195 (85.64%), Query Frame = 2 
Query:    2 GAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 586
            G YPIKLFYTSN+PIILQSALVSNLYFISQLLYR++  N  VNL G W+ SEYS   IPV GL YY+++P +++ + A+PFHALFY+ FMLT+CALFSK WIEVSGSSARDVAKQLK+QQM M GHRD+++ KELNRYIPTAAAFGG+CIGALTV+ADFMGAIGSGTGILLAVTIIYQYFETF KE+    G  G
Sbjct:  278 GTYPIKLFYTSNIPIILQSALVSNLYFISQLLYRRFPDNILVNLFGAWRTSEYSQQMIPVSGLTYYISSPNNMSAVLADPFHALFYITFMLTSCALFSKVWIEVSGSSARDVAKQLKDQQMTMKGHRDTSVIKELNRYIPTAAAFGGLCIGALTVVADFMGAIGSGTGILLAVTIIYQYFETFVKEQQELSGGIG 472
[Close]
BLAST of CF418039 vs. ExPASy Swiss-Prot
Match: S61A2_PONAB (Protein transport protein Sec61 subunit alpha isoform 2 OS=Pongo abelii GN=SEC61A2 PE=2 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 7.372e-73
Identity = 138/196 (70.41%), Postives = 163/196 (83.16%), Query Frame = 2 
Query:    5 AYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 586
            +YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG+W +    G   S PVGGL YY++ P S+  +  +P H + Y++FML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHRD+++  ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+A E+G  G
Sbjct:  278 SYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAILEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQA-EVGGMG 472
[Close]
BLAST of CF418039 vs. ExPASy Swiss-Prot
Match: S61A2_MOUSE (Protein transport protein Sec61 subunit alpha isoform 2 OS=Mus musculus GN=Sec61a2 PE=2 SV=3)

HSP 1 Score: 273.092 bits (697), Expect = 9.628e-73
Identity = 138/196 (70.41%), Postives = 163/196 (83.16%), Query Frame = 2 
Query:    5 AYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 586
            +YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG+W +    G   S PVGGL YY++ P S+  +  +P H + Y++FML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHRD+++  ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+A E+G  G
Sbjct:  278 SYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQA-EVGGMG 472
[Close]
BLAST of CF418039 vs. ExPASy Swiss-Prot
Match: S61A2_HUMAN (Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo sapiens GN=SEC61A2 PE=2 SV=3)

HSP 1 Score: 273.092 bits (697), Expect = 9.628e-73
Identity = 138/196 (70.41%), Postives = 163/196 (83.16%), Query Frame = 2 
Query:    5 AYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 586
            +YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG+W +    G   S PVGGL YY++ P S+  +  +P H + Y++FML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHRD+++  ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+A E+G  G
Sbjct:  278 SYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQA-EVGGMG 472
[Close]
BLAST of CF418039 vs. ExPASy Swiss-Prot
Match: S61A2_BOVIN (Protein transport protein Sec61 subunit alpha isoform 2 OS=Bos taurus GN=SEC61A2 PE=2 SV=3)

HSP 1 Score: 273.092 bits (697), Expect = 9.628e-73
Identity = 138/196 (70.41%), Postives = 163/196 (83.16%), Query Frame = 2 
Query:    5 AYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 586
            +YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG+W +    G   S PVGGL YY++ P S+  +  +P H + Y++FML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHRD+++  ELNRYIPTAAAFGG+CIGAL+VLADF+GAIGSGTGILLAVTIIYQYFE F KE+A E+G  G
Sbjct:  278 SYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTSMVHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQA-EVGGMG 472
[Close]
BLAST of CF418039 vs. ExPASy Swiss-Prot
Match: S61A2_DANRE (Protein transport protein Sec61 subunit alpha-like 2 OS=Danio rerio GN=sec61al2 PE=2 SV=3)

HSP 1 Score: 272.322 bits (695), Expect = 1.642e-72
Identity = 135/195 (69.23%), Postives = 161/195 (82.56%), Query Frame = 2 
Query:    8 YPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 586
            YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL YY++ P S   +  +P HA+ Y++FML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIG L+V+ADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  279 YPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTGGPARAYPVGGLCYYLSPPESFGTVLEDPIHAIIYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSVG 472
[Close]
BLAST of CF418039 vs. ExPASy Swiss-Prot
Match: S61A1_DANRE (Protein transport protein Sec61 subunit alpha-like 1 OS=Danio rerio GN=sec61al1 PE=2 SV=3)

HSP 1 Score: 272.322 bits (695), Expect = 1.642e-72
Identity = 136/195 (69.74%), Postives = 161/195 (82.56%), Query Frame = 2 
Query:    8 YPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 586
            YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL YY++ P S   +  +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIG L+V+ADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  279 YPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLDDPVHAVIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of CF418039 vs. ExPASy Swiss-Prot
Match: SC61A_BOVVA (Protein transport protein Sec61 subunit alpha OS=Bovichtus variegatus GN=sec61a PE=2 SV=3)

HSP 1 Score: 271.166 bits (692), Expect = 3.659e-72
Identity = 136/195 (69.74%), Postives = 161/195 (82.56%), Query Frame = 2 
Query:    8 YPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 586
            YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++  SG   + PV GL YY++ P S   +  +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIG L+V+ADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  279 YPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDATTSGPARAYPVAGLCYYLSPPESFGSVLDDPVHAVIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEVGSMG 472
[Close]
BLAST of CF418039 vs. ExPASy Swiss-Prot
Match: SC61A_GADOC (Protein transport protein Sec61 subunit alpha OS=Gadus ogac GN=sec61a PE=2 SV=3)

HSP 1 Score: 270.781 bits (691), Expect = 4.779e-72
Identity = 136/195 (69.74%), Postives = 159/195 (81.54%), Query Frame = 2 
Query:    8 YPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 586
            YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL YY + P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIG L+V+ADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  279 YPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTGGPARAYPVGGLCYYFSPPESFGSVLDDPVHASIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEMGSMG 472
[Close]
BLAST of CF418039 vs. ExPASy Swiss-Prot
Match: S61A1_ONCMY (Protein transport protein Sec61 subunit alpha isoform A OS=Oncorhynchus mykiss GN=sec61aa PE=2 SV=3)

HSP 1 Score: 270.781 bits (691), Expect = 4.779e-72
Identity = 135/195 (69.23%), Postives = 160/195 (82.05%), Query Frame = 2 
Query:    8 YPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSNLQKELNRYIPTAAAFGGVCIGALTVLADFMGAIGSGTGILLAVTIIYQYFETFEKERASELGFFG 586
            YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL Y+++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR++++  ELNRYIPTAAAFGG+CIG L+V+ADF+GAIGSGTGILLAVTIIYQYFE F KE+ SE+G  G
Sbjct:  279 YPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTGGPARAYPVGGLCYFLSPPESFGSVLDDPIHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMGGHRETSMVHELNRYIPTAAAFGGLCIGGLSVMADFLGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEMGSMG 472
The following BLAST results are available for this feature:
BLAST of CF418039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SC61A_DICDI9.606e-8174.87Protein transport protein Sec61 subunit alpha OS=D... [more]
S61A2_PONAB7.372e-7370.41Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_MOUSE9.628e-7370.41Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_HUMAN9.628e-7370.41Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_BOVIN9.628e-7370.41Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_DANRE1.642e-7269.23Protein transport protein Sec61 subunit alpha-like... [more]
S61A1_DANRE1.642e-7269.74Protein transport protein Sec61 subunit alpha-like... [more]
SC61A_BOVVA3.659e-7269.74Protein transport protein Sec61 subunit alpha OS=B... [more]
SC61A_GADOC4.779e-7269.74Protein transport protein Sec61 subunit alpha OS=G... [more]
S61A1_ONCMY4.779e-7269.23Protein transport protein Sec61 subunit alpha isof... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-969 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418039 ID=CF418039; Name=CF418039; organism=Citrus sinensis; type=EST; length=684bp
GGGTGCTTATCCAATTAAGCTATTCTACACATCCAACATGCCTATCATTC
TCCAATCTGCACTTGTCTCAAATCTGTATTTCATCTCTCAGTTGCTCTAC
AGGAAGTACAGTGGCAATTTCTTTGTTAATCTGTTAGGGAAGTGGAAGGA
ATCTGAATATTCTGGCCACTCTATTCCAGTTGGTGGCCTAGCTTATTATG
TCACTGCACCAGCAAGCTTGGCTGATATGGCAGCCAATCCTTTCCATGCT
CTGTTCTACCTGGTTTTTATGCTTACTGCTTGTGCTCTTTTCTCGAAAAC
TTGGATTGAAGTTTCAGGGTCTTCTGCCCGGGATGTGGCCAAGCAGCTTA
AGGAGCAACAAATGGTGATGCCTGGACATAGAGACTCAAATCTTCAAAAG
GAACTGAACCGGTACATACCAACTGCTGCTGCCTTTGGCGGAGTGTGCAT
TGGTGCATTAACAGTCCTGGCTGATTTCATGGGAGCAATTGGGTCAGGAA
CTGGGATATTGCTCGCAGTTACGATCATATATCAGTACTTTGAGACGTTT
GAGAAGGAGAGAGCTAGTGAACTTGGCTTCTTTGGCTTTTAATACACCAA
TGATCTTGAGTTTCAGATTAGTTGGTGAGTAGTATTGTGCAATATTGTTG
CAGAATTCAAAGACTTAACATAGGCCATACCTTG
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