CF418040

Overview
NameCF418040
Unique NameCF418040
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:585..1264. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.042e-103
Identity = 190/213 (89.20%), Postives = 198/213 (92.96%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAXRACYRSVPMAAAA 641
            VGAQHSHCYA+WY S PGLKVL P+S+EDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSF LPIGKAKIEREGKDVTITAFSK+VG +LKAAEIL KEGISAEVINLRSIRPLDR TINASVRKTNRLVTVEEGFPQHGVGAEIC SVIEESF YLDA VERI GADVPMPYA NLER+ VP VEDIVRAA RAC+RSVP+AAAA
Sbjct:  147 VGAQHSHCYASWYGSCPGLKVLVPHSAEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFWLPIGKAKIEREGKDVTITAFSKMVGFALKAAEILEKEGISAEVINLRSIRPLDRPTINASVRKTNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDATVERIGGADVPMPYAGNLERLVVPHVEDIVRAAKRACHRSVPLAAAA 359          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 369.392 bits (947), Expect = 9.785e-102
Identity = 184/206 (89.32%), Postives = 197/206 (95.63%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAXRACYRS 620
            VGAQHS CYAAWYASVPGLKVL+PYS+EDARGLLKAAIRDPDPVVFLENELLYGESFP+S E LDSSFCLPIGKAKIEREGKDVTI  FSK+VG +LKAAE LA+EGISAEVINLRSIRPLDR+TINASVRKT+RLVTVEEGFPQHGV AEICASV+EESFSYLDAPVERIAGADVPMPYAANLER+A+PQ+EDIVRA+ RACYRS
Sbjct:  157 VGAQHSQCYAAWYASVPGLKVLAPYSAEDARGLLKAAIRDPDPVVFLENELLYGESFPISEEALDSSFCLPIGKAKIEREGKDVTIVTFSKMVGFALKAAEKLAEEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGFPQHGVCAEICASVVEESFSYLDAPVERIAGADVPMPYAANLERLALPQIEDIVRASKRACYRS 362          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 3.070e-71
Identity = 133/206 (64.56%), Postives = 166/206 (80.58%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAXRACYRS 620
            VGAQHS C+AAWY SVPGLKV++P+S+ D RGLLK+AIRD +PVV+LE+ELLY   F +S +  D  + +PIGKAK+EREGKDVTI  FS+IV   ++AAEILAKEGISAEVINLR+IRP+D  TI  S++KTN+LVTVEEG+ Q G+GAEI A ++E +F YLDAP+ERI GADVPMPYA+NLE  A+ Q ++IV AA R   R+
Sbjct:  150 VGAQHSQCFAAWYGSVPGLKVVAPWSAADHRGLLKSAIRDDNPVVYLESELLYNYKFDLSDQEQDKEYLVPIGKAKVEREGKDVTIVGFSRIVSNCMEAAEILAKEGISAEVINLRTIRPIDAETIVNSLKKTNKLVTVEEGWAQSGIGAEISALMMEHAFDYLDAPIERICGADVPMPYASNLENAAMVQTQNIVNAAKRVTQRN 355          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_YEAST (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 7.325e-65
Identity = 130/200 (65.00%), Postives = 153/200 (76.50%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRA 596
            VGAQHS  ++ WY S+PGLKVL PYS+EDARGLLKAAIRDP+PVVFLENELLYGESF +S E L   F LP  KAKIEREG D++I  +++ V  SL+AAEIL K+ G+SAEVINLRSIRPLD   I  +V+KTN L+TVE  FP  GVGAEI A V+E E+F YLDAP++R+ GADVP PYA  LE  A P    IV+A
Sbjct:  160 VGAQHSQDFSPWYGSIPGLKVLVPYSAEDARGLLKAAIRDPNPVVFLENELLYGESFEISEEALSPEFTLPY-KAKIEREGTDISIVTYTRNVQFSLEAAEILQKKYGVSAEVINLRSIRPLDTEAIIKTVKKTNHLITVESTFPSFGVGAEIVAQVMESEAFDYLDAPIQRVTGADVPTPYAKELEDFAFPDTPTIVKA 358          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_MOUSE (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.249e-64
Identity = 123/202 (60.89%), Postives = 155/202 (76.73%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAXR 605
            V AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG +F + AE     F +PIGKAKIER+G  +T+ A S+ VG  L+AA +L+KEGI  EVINLR+IRP+D   I ASV KTN LVTVE G+PQ GVGAEICA ++E  +F++LDAP  R+ GADVPMPYA  LE  +VPQV+DI+ A  +
Sbjct:  154 VAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVMLENELMYGVAFELPAEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECEVINLRTIRPMDIEAIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKVLEDNSVPQVKDIIFAVKK 355          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_BOVIN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2)

HSP 1 Score: 245.743 bits (626), Expect = 1.632e-64
Identity = 125/199 (62.81%), Postives = 153/199 (76.88%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRA 596
            V AQHS C+AAWY   PGLKV+SP+SSEDA+GL+K+AIRD +PVV LENEL+YG  F + +E     F +PIGKAKIER+G  VTI A S+ VG  L+AA +L+KEGI  EVINLR+IRP+D  TI  SV KTN LVTVE G+PQ GVGAEICA ++E  +F++LDAP  R+ GADVPMPYA  LE  +VPQV+DI+ A
Sbjct:  154 VAAQHSQCFAAWYGHCPGLKVVSPWSSEDAKGLIKSAIRDNNPVVVLENELMYGVPFELPSEAQSKDFLIPIGKAKIERQGTHVTIVAHSRPVGHCLEAATVLSKEGIECEVINLRTIRPMDIETIEGSVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSVPQVKDIIFA 352          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_SCHPO (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.783e-64
Identity = 124/206 (60.19%), Postives = 159/206 (77.18%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEIL-AKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAXRACY 614
            V AQHS  +A WY S+PGLKV+SPYS+EDARGLLKAAIRDP+PVV LENE+LYG++FP+S E L   F LP G AK+ER GKD+TI   S  V  +L+AA+ L A  G+ AEVINLRSIRPLD +TI ASV+KTNR+VTV++ + QHG+G+EI A ++E ++F YLDAPVER++ ADVPMPY+  +E  +VP  + +V AA +  Y
Sbjct:  159 VAAQHSQHFAPWYGSIPGLKVVSPYSAEDARGLLKAAIRDPNPVVVLENEILYGKTFPISKEALSEDFVLPFGLAKVERPGKDITIVGESISVVTALEAADKLKADYGVEAEVINLRSIRPLDINTIAASVKKTNRIVTVDQAYSQHGIGSEIAAQIMESDAFDYLDAPVERVSMADVPMPYSHPVEAASVPNADVVVAAAKKCLY 364          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 4.748e-64
Identity = 120/205 (58.54%), Postives = 155/205 (75.61%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAXRACYR 617
            V AQHS CYAAWY+ +PGLKV+ PY++ DA+GLLKAAIRDP+PV+FLENE+LYG+SF V    LD  F LPIGKA+I R GKD T+ +F   +  ++KAA  L  +GI  E+I+LR+IRP+D  T+  SV+KT RLVTVEEG+PQ  VG EI   V++++F YLDAP+  IAG DVPMPYAANLE++A+P V ++V A    CY+
Sbjct:  259 VAAQHSQCYAAWYSHIPGLKVVMPYTAADAKGLLKAAIRDPNPVIFLENEILYGQSFEVPK--LDD-FVLPIGKARIHRTGKDATLVSFGIGMTYAIKAAAELEAQGIDVEIIDLRTIRPMDLPTVIESVKKTGRLVTVEEGYPQSSVGTEIATRVMQQAFDYLDAPILTIAGKDVPMPYAANLEKLALPNVAEVVDAVKAVCYK 460          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_RAT (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 4.748e-64
Identity = 121/199 (60.80%), Postives = 153/199 (76.88%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRA 596
            V AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG +F +  E     F +PIGKAKIER+G  +T+ A S+ VG  L+AA +L+KEGI  EVINLR+IRP+D   I ASV KTN LVTVE G+PQ GVGAEICA ++E  +F++LDAP  R+ GADVPMPYA  LE  ++PQV+DI+ A
Sbjct:  154 VAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDDNPVVMLENELMYGVAFELPTEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECEVINLRTIRPMDIEAIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFA 352          
BLAST of CF418040 vs. ExPASy Swiss-Prot
Match: ODPB_PONAB (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pongo abelii GN=PDHB PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.356e-63
Identity = 119/199 (59.80%), Postives = 152/199 (76.38%), Query Frame = 3
Query:    3 VGAQHSHCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFSYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRA 596
            V AQHS C+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV LENEL+YG  F    E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG+  EVIN+R+IRP+D  TI ASV KTN LVTVE G+PQ GVGAEICA ++E  +F++LDAP  R+ GADVPMPYA  LE  ++PQV+DI+ A
Sbjct:  154 VAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFA 352          
The following BLAST results are available for this feature:
BLAST of CF418040 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
ODPB_PEA3.042e-10389.20Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ARATH9.785e-10289.32Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_DICDI3.070e-7164.56Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_YEAST7.325e-6565.00Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_MOUSE1.249e-6460.89Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_BOVIN1.632e-6462.81Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_SCHPO2.783e-6460.19Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RHIME4.748e-6458.54Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RAT4.748e-6460.80Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_PONAB2.356e-6359.80Pyruvate dehydrogenase E1 component subunit beta, ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-970 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418040 ID=CF418040; Name=CF418040; organism=Citrus sinensis; type=EST; length=680bp
GAGTGGGTGCCCAACACTCTCACTGTTATGCAGCATGGTATGCCTCAGTC
CCTGGGTTGAAAGTACTGAGCCCATACAGTTCTGAAGATGCTCGTGGACT
GCTAAAAGCTGCTATAAGGGATCCGGATCCTGTTGTTTTTCTTGAAAATG
AGTTGTTATATGGTGAGTCATTCCCGGTATCAGCTGAAGTTCTTGATTCC
AGTTTTTGCCTTCCAATTGGGAAAGCTAAAATTGAGAGAGAAGGAAAGGA
TGTAACCATTACAGCTTTCTCAAAAATTGTGGGCCTTTCACTCAAGGCGG
CTGAGATACTTGCAAAGGAAGGAATAAGTGCTGAGGTTATCAATCTGCGG
TCAATTAGGCCACTAGATAGATCCACAATCAATGCTTCTGTCAGAAAAAC
TAACAGACTGGTAACAGTTGAAGAAGGGTTCCCTCAGCATGGAGTTGGTG
CCGAAATCTGTGCATCCGTTATTGAGGAAAGCTTCAGTTATCTTGATGCA
CCAGTTGAGAGAATTGCTGGAGCTGATGTTCCAATGCCATATGCAGCCAA
TCTTGAGAGAATGGCTGTCCCACAGGTTGAAGATATTGTCCGAGCTGCCN
AGAGAGCATGCTACAGATCTGTGCCNATGGCTGCTGCAGCATAAAAGAAC
TGATTCTGCCCTGAAGCTTTGTCAGATCCT
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