CF418042

Overview
NameCF418042
Unique NameCF418042
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF418042_ssr234 microsatellite CF418042_ssr234:234..248. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9675 contig Csv1_Contig9675:24..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF418042 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.748e-51
Identity = 112/176 (63.64%), Postives = 131/176 (74.43%), Query Frame = 2
Query:  143 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRXAMLGLVALAFTEFVKGGTL 646
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNGR AMLGLVALAFTEFVKG +L
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSL 195          
BLAST of CF418042 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.607e-36
Identity = 90/197 (45.69%), Postives = 124/197 (62.94%), Query Frame = 2
Query:   74 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRXAMLGLVALAFTEFVKGGTL 646
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNGR AM+GLVALAFTE+VKGG L
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPL 196          
BLAST of CF418042 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.134e-31
Identity = 73/127 (57.48%), Postives = 91/127 (71.65%), Query Frame = 2
Query:  263 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRXAMLGLVALAFTEFVKG 637
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNGR AMLGLVALA TEF+ G
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITG 225          
BLAST of CF418042 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.526e-31
Identity = 85/185 (45.95%), Postives = 109/185 (58.92%), Query Frame = 2
Query:   86 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRXAMLGLVALAFTEFVKG 637
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGR AMLGLVALA TE + G
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITG 166          
BLAST of CF418042 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.298e-31
Identity = 67/117 (57.26%), Postives = 83/117 (70.94%), Query Frame = 2
Query:  290 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGRXAMLGLVALAFTEFVKG 637
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNGR AM+GLVALA TE + G
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
BLAST of CF418042 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.217e-17
Identity = 60/128 (46.88%), Postives = 72/128 (56.25%), Query Frame = 2
Query:  266 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGRXAMLGLVALAFTEFVKG 637
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NGR AM+G  A+   E ++G
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of CF418042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA3.748e-5163.64Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL2.607e-3645.69Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU1.134e-3157.48High molecular mass early light-inducible protein ... [more]
ELI9_HORVU2.526e-3145.95Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU3.298e-3157.26Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA1.217e-1746.88Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_115000-972 Citrus sinensis: Insect-damaged immature leaves/stems from field collected Valencia orange Citrus sinensis cDNA clone IDFL-012_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF418042 ID=CF418042; Name=CF418042; organism=Citrus sinensis; type=EST; length=700bp
AAGGAACCCGCCGACCTGAAGCACCCAATTCCCGAATTATACTTTGTTCT
GTTTTCTACTTCATAAATTAAAAATGGCCGCATCACTTGCTACTCAATCT
ATGCTGGCAAGTCCTGTAGCAGCTCGTGTGACTGGTATCAGGAGATCCGG
GGCAAACCAACTTTCCTCCGTCAAGTACTTGCCTAGTCTGCGTAGAAATG
TCAACTTATCCGTGCGCTGCACGGCAGAGGATGAGCAGCAGCAGCAGCAG
AAAGATGATCAACCAACCATACCGAAAGCTGAGCCTCAGCCACCAAAGAA
GCCGCGGATGAGCACGGGGTTCTCTGAGGTGTTCGCGTTCAGCGGGCCGG
CACCGGAGAGGATAAACGGGAGGCTTGCGATGATTGGGTTCGTGGCTGCA
TTGGGGGTGGAGATATCCAAGGGTCAGGATGTGTTTGCCCAGTTATCAGA
CGGTGGGGTTGCCTGGTTCTTGGGGACCAGTGTTTTGCTCACGGTTGCGT
CCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTGGAGTCTAAATCGGATGGG
TTCATGACTTCGGATGCTGAGTTGTGGAATGGGAGGNTTGCTATGCTGGG
CCTTGTTGCTTTGGCTTTCACCGAGTTTGTTAAGGGTGGCACCCTTGNTT
AAGCTTAATTTTGTTTAGATCTGTAGATCTGTATTTTTTTAACTAATAAT
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