CF503832

Overview
NameCF503832
Unique NameCF503832
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length172
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503832 vs. ExPASy Swiss-Prot
Match: AB15B_ARATH (ABC transporter B family member 15 OS=Arabidopsis thaliana GN=ABCB15 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.904e-17
Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 KILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVA 120
            K+LTFEVGWFD+DENSSGAICSRLAKDANVVRSLVGDR+A
Sbjct:  755 KVLTFEVGWFDRDENSSGAICSRLAKDANVVRSLVGDRMA 794          

HSP 2 Score: 28.4906 bits (62), Expect = 1.904e-17
Identity = 12/19 (63.16%), Postives = 17/19 (89.47%), Query Frame = 2
Query:  116 LPLLVQTLSSITIAFTMSL 172
            + L+VQT+S++TIAFTM L
Sbjct:  793 MALVVQTVSAVTIAFTMGL 811          
BLAST of CF503832 vs. ExPASy Swiss-Prot
Match: MDR_ORYSJ (Putative multidrug resistance protein OS=Oryza sativa subsp. japonica GN=Os02g0190300 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.451e-14
Identity = 36/40 (90.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:    1 KILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVA 120
            KILTFE+GWFD+DENSSGAICS+LAKDANVVRSLVGDR+A
Sbjct:  757 KILTFEIGWFDRDENSSGAICSQLAKDANVVRSLVGDRMA 796          
BLAST of CF503832 vs. ExPASy Swiss-Prot
Match: AB22B_ARATH (ABC transporter B family member 22 OS=Arabidopsis thaliana GN=ABCB22 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.730e-14
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 KILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVA 120
            K+LTFEV WFD+DENSSG+ICSRLAKDANVVRSLVG+RV+
Sbjct:  777 KLLTFEVSWFDEDENSSGSICSRLAKDANVVRSLVGERVS 816          

HSP 2 Score: 23.483 bits (49), Expect = 1.730e-14
Identity = 9/17 (52.94%), Postives = 15/17 (88.24%), Query Frame = 2
Query:  122 LLVQTLSSITIAFTMSL 172
            LLVQT+S++++A T+ L
Sbjct:  817 LLVQTISAVSVACTLGL 833          
BLAST of CF503832 vs. ExPASy Swiss-Prot
Match: AB16B_ARATH (ABC transporter B family member 16 OS=Arabidopsis thaliana GN=ABCB16 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.929e-14
Identity = 34/40 (85.00%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 KILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVA 120
            KILTFEV WFD++ENSSGAICSRLAKDANVVRSLVG+R++
Sbjct:  741 KILTFEVNWFDEEENSSGAICSRLAKDANVVRSLVGERMS 780          

HSP 2 Score: 22.7126 bits (47), Expect = 4.929e-14
Identity = 9/19 (47.37%), Postives = 15/19 (78.95%), Query Frame = 2
Query:  116 LPLLVQTLSSITIAFTMSL 172
            + LLVQT+S++ +A T+ L
Sbjct:  779 MSLLVQTISTVMVACTIGL 797          
BLAST of CF503832 vs. ExPASy Swiss-Prot
Match: AB18B_ARATH (ABC transporter B family member 18 OS=Arabidopsis thaliana GN=ABCB18 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 8.317e-14
Identity = 35/40 (87.50%), Postives = 39/40 (97.50%), Query Frame = 1
Query:    1 KILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVA 120
            KILTFEV WFD+DENSSGAICSRLAKDAN+VRSLVGDR++
Sbjct:  740 KILTFEVNWFDKDENSSGAICSRLAKDANMVRSLVGDRMS 779          

HSP 2 Score: 20.4014 bits (41), Expect = 8.317e-14
Identity = 8/19 (42.11%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  116 LPLLVQTLSSITIAFTMSL 172
            + LLVQT+S+++I   + L
Sbjct:  778 MSLLVQTISAVSITCAIGL 796          
BLAST of CF503832 vs. ExPASy Swiss-Prot
Match: AB17B_ARATH (ABC transporter B family member 17 OS=Arabidopsis thaliana GN=ABCB17 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.073e-13
Identity = 34/40 (85.00%), Postives = 38/40 (95.00%), Query Frame = 1
Query:    1 KILTFEVGWFDQDENSSGAICSRLAKDANVVRSLVGDRVA 120
            KILTFEV WFD D+NSSGAICSRLAKDANVVRS+VGDR++
Sbjct:  755 KILTFEVNWFDIDDNSSGAICSRLAKDANVVRSMVGDRMS 794          

HSP 2 Score: 20.7866 bits (42), Expect = 3.073e-13
Identity = 9/19 (47.37%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  116 LPLLVQTLSSITIAFTMSL 172
            + LLVQT+S++ IA  + L
Sbjct:  793 MSLLVQTISAVIIACIIGL 811          
The following BLAST results are available for this feature:
BLAST of CF503832 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
AB15B_ARATH1.904e-1792.50ABC transporter B family member 15 OS=Arabidopsis ... [more]
MDR_ORYSJ1.451e-1490.00Putative multidrug resistance protein OS=Oryza sat... [more]
AB22B_ARATH1.730e-1485.00ABC transporter B family member 22 OS=Arabidopsis ... [more]
AB16B_ARATH4.929e-1485.00ABC transporter B family member 16 OS=Arabidopsis ... [more]
AB18B_ARATH8.317e-1487.50ABC transporter B family member 18 OS=Arabidopsis ... [more]
AB17B_ARATH3.073e-1385.00ABC transporter B family member 17 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-319 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_C08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503832 ID=CF503832; Name=CF503832; organism=Citrus sinensis; type=EST; length=172bp
AAGATACTCACGTTTGAAGTTGGGTGGTTTGATCAAGATGAGAATTCGAG
TGGTGCGATTTGCTCTCGACTTGCCAAAGATGCCAATGTGGTGAGATCAT
TGGTGGGTGATCGGGTTGCCTTTGCTTGTACAAACTCTCTCTTCTATAAC
CATAGCTTTCACCATGAGCCTA
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