CF503836

Overview
NameCF503836
Unique NameCF503836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length341
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12348 contig Csv1_Contig12348:176..516. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: ERF3B_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Mus musculus GN=Gspt2 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.463e-23
Identity = 52/92 (56.52%), Postives = 70/92 (76.09%), Query Frame = 1
Query:   70 PEPKVKH--KEVSAVEDAESQQETEGNNKR-HLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            PE  VK   +E   V  ++S     G  K+ H+NVVFIGHVDAGKST GGQI+FL+G VD RT++KYE+EAK+K+RE+WY+++ +DTN+EER
Sbjct:  176 PEESVKEVMEEKEEVRKSKSVSIPSGAPKKEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDRRTLEKYEREAKEKNRETWYLSWALDTNQEER 267          
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: ERF3B_PONAB (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Pongo abelii GN=GSPT2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.462e-22
Identity = 44/63 (69.84%), Postives = 58/63 (92.06%), Query Frame = 1
Query:  148 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            K H+NVVFIGHVDAGKST GGQI+FL+G VD RT++KYE+EAK+K+RE+WY+++ +DTN+EER
Sbjct:  201 KEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEER 263          
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: ERF3B_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Homo sapiens GN=GSPT2 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 2.462e-22
Identity = 44/63 (69.84%), Postives = 58/63 (92.06%), Query Frame = 1
Query:  148 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            K H+NVVFIGHVDAGKST GGQI+FL+G VD RT++KYE+EAK+K+RE+WY+++ +DTN+EER
Sbjct:  201 KEHVNVVFIGHVDAGKSTIGGQIMFLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEER 263          
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: ERF3A_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Mus musculus GN=Gspt1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.216e-22
Identity = 52/104 (50.00%), Postives = 75/104 (72.12%), Query Frame = 1
Query:   25 EEDSEEVQAVSQPVHPEPKVKHKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            EE ++E+    + + P+PK      SAV    + +      K H+NVVFIGHVDAGKST GGQI++L+G VD RT++KYE+EAK+K+RE+WY+++ +DTN+EER
Sbjct:   44 EESTQEMMEEEEEI-PKPK------SAVAPPGAPK------KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEER 134          
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: ERF3A_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Homo sapiens GN=GSPT1 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 43/63 (68.25%), Postives = 58/63 (92.06%), Query Frame = 1
Query:  148 KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            K H+NVVFIGHVDAGKST GGQI++L+G VD RT++KYE+EAK+K+RE+WY+++ +DTN+EER
Sbjct:   72 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEER 134          
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: ERF3_YEAST (Eukaryotic peptide chain release factor GTP-binding subunit OS=Saccharomyces cerevisiae GN=SUP35 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.556e-21
Identity = 52/121 (42.98%), Postives = 77/121 (63.64%), Query Frame = 1
Query:    4 VEVVDKMEEDSE----EVQAVSQPVHPEPKVKHKEVSA-VEDAESQQETEGNN-----KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            V+  +K EE SE    E   +S+  H           A +++ E + + E  N     K H++++F+GHVDAGKST GG +L+L+G VD RTI+KYE+EAKD  R+ WY++++MDTN+EER
Sbjct:  200 VQTEEKTEEKSELPKVEDLKISESTHNTNNANVTSADALIKEQEEEVDDEVVNDMFGGKDHVSLIFMGHVDAGKSTMGGNLLYLTGSVDKRTIEKYEREAKDAGRQGWYLSWVMDTNKEER 320          
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: ERF3_CANMA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida maltosa GN=SUP35 PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 4.644e-21
Identity = 49/112 (43.75%), Postives = 70/112 (62.50%), Query Frame = 1
Query:   13 VDKMEEDSEEVQAVSQPVHPEPKVKHKEVSAVEDAESQQETEGNN----KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            V K    +  V + S PV     V   +  A E  +   E    +    K H++++F+GHVDAGKST GG IL+L+G VD RT++KYE+EAKD  R+ WY++++MDTN+EER
Sbjct:  238 VKKESTPTPSVASKSAPVSASASVVTADALAKEQEDEVDEEVVKDMFGGKDHVSIIFMGHVDAGKSTMGGNILYLTGSVDKRTVEKYEREAKDAGRQGWYLSWVMDTNKEER 349          
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: ERF3_PICPI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Pichia pinus GN=SUP2 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.065e-21
Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = 1
Query:   34 SEEVQAVSQPVHPEPKVKHKEVSA------VEDAESQQETEGNN-----KRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            S+EV A +  +  E     KE +       V++ E Q +    N     K H++++F+GHVDAGKST GG +LFL+G VD RT++KYE+EAKD  R+ WY+++IMDTN+EER
Sbjct:  267 SKEVAAAAAALKKEVSQAKKESNVTNADALVKEQEEQIDASIVNDMFGGKDHMSIIFMGHVDAGKSTMGGNLLFLTGAVDKRTVEKYEREAKDAGRQGWYLSWIMDTNKEER 378          
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: ERF3_DICDI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Dictyostelium discoideum GN=erf3 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.351e-20
Identity = 51/110 (46.36%), Postives = 67/110 (60.91%), Query Frame = 1
Query:    7 EVVDKMEEDSEEVQAVSQPVHPEPKVKHKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            +V D   ED +EV  V++ +    KV  ++                ++ HLN+VF+GHVDAGKST  G I+ L+GQVD  T+ KYE+EAK+  RE W  AYIMDTNEEER
Sbjct:   84 KVEDDDIEDDDEVDEVAEKIEQVVKVLPED----------------SREHLNIVFLGHVDAGKSTLSGSIMVLTGQVDPHTLAKYEREAKENHREGWIYAYIMDTNEEER 177          
BLAST of CF503836 vs. ExPASy Swiss-Prot
Match: ERF3_DEBHA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Debaryomyces hansenii GN=SUP35 PE=3 SV=4)

HSP 1 Score: 97.8265 bits (242), Expect = 1.765e-20
Identity = 47/94 (50.00%), Postives = 68/94 (72.34%), Query Frame = 1
Query:   55 SQPVHPEPKVKHKEVSAVEDAESQQETEGNNKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEER 336
            S PV  + KV  ++V  V++   +    G  K H++++F+GHVDAGKST GG IL+L+G VD RT+ KYE+EAKD  R+ WY++++MDTN+EER
Sbjct:  248 STPVTSD-KVIQEQVDEVDEEVVKDMFGG--KDHVSIIFMGHVDAGKSTMGGNILYLTGSVDKRTVDKYEREAKDAGRQGWYLSWVMDTNKEER 338          
The following BLAST results are available for this feature:
BLAST of CF503836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
ERF3B_MOUSE8.463e-2356.52Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_PONAB2.462e-2269.84Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_HUMAN2.462e-2269.84Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_MOUSE3.216e-2250.00Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_HUMAN5.486e-2268.25Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_YEAST3.556e-2142.98Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_CANMA4.644e-2143.75Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_PICPI6.065e-2145.54Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_DICDI1.351e-2046.36Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_DEBHA1.765e-2050.00Eukaryotic peptide chain release factor GTP-bindin... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-323 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503836 ID=CF503836; Name=CF503836; organism=Citrus sinensis; type=EST; length=341bp
GAAGTTGAGGTGGTGGATAAGATGGAGGAAGATTCAGAGGAGGTGCAAGC
AGTATCCCAGCCTGTTCATCCTGAGCCTAAAGTGAAACACAAGGAAGTAT
CTGCGGTGGAAGATGCTGAATCTCAGCAAGAGACTGAAGGAAATAATAAG
CGACACTTGAATGTTGTATTTATTGGTCATGTTGATGCTGGAAAGTCTAC
CACTGGAGGCCAGATACTTTTTCTTAGTGGCCAGGTCGATGACCGTACAA
TTCAAAAATATGAGAAAGAAGCAAAGGATAAAAGTAGAGAAAGCTGGTAT
ATGGCGTATATTATGGACACTAATGAAGAGGAGAGGATCAA
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