CF503840

Overview
NameCF503840
Unique NameCF503840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length430
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF503840_ssr58 microsatellite CF503840_ssr58:58..69. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig501 contig Csv1_Contig501:1..430. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: ALDR_MOUSE (Aldose reductase OS=Mus musculus GN=Akr1b1 PE=1 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 6.328e-32
Identity = 62/108 (57.41%), Postives = 80/108 (74.07%), Query Frame = 1
Query:  106 HFVLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            H  LN G K+P++GLGTW+S PG V  AV  AI  GYRHIDCAQ+Y NEKE+G+ L++  ++ VVKR+DL+I SKLW  +H+   V  A  +TL DLQ+DYLDLYL+H
Sbjct:    4 HLELNNGTKMPTLGLGTWKSPPGQVTEAVKVAIDLGYRHIDCAQVYQNEKEVGVALQEKLKEQVVKRQDLFIVSKLWCTFHDKSMVKGAFQKTLSDLQLDYLDLYLIH 111          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: ALDR_RAT (Aldose reductase OS=Rattus norvegicus GN=Akr1b1 PE=1 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 8.265e-32
Identity = 62/108 (57.41%), Postives = 80/108 (74.07%), Query Frame = 1
Query:  106 HFVLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            H  LN G K+P++GLGTW+S PG V  AV  AI  GYRHIDCAQ+Y NEKE+G+ L++  ++ VVKR+DL+I SKLW  +H+   V  A  +TL DLQ+DYLDLYL+H
Sbjct:    4 HLELNNGTKMPTLGLGTWKSPPGQVTEAVKVAIDMGYRHIDCAQVYQNEKEVGVALQEKLKEQVVKRQDLFIVSKLWCTFHDQSMVKGACQKTLSDLQLDYLDLYLIH 111          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: AK1A1_MOUSE (Alcohol dehydrogenase [NADP+] OS=Mus musculus GN=Akr1a1 PE=1 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 1.410e-31
Identity = 64/107 (59.81%), Postives = 80/107 (74.77%), Query Frame = 1
Query:  112 VLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFF-EDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            +L+TG K+P +GLGTW+S+PG V  A+  A+ AGYRHIDCA +YGNE EIG  LK+       V RE+L++TSKLWN  H PEDV  AL +TL DLQ++YLDLYLMH
Sbjct:    7 LLHTGQKMPLIGLGTWKSEPGQVKAAIKHALSAGYRHIDCASVYGNETEIGEALKESVGSGKAVPREELFVTSKLWNTKHHPEDVEPALRKTLADLQLEYLDLYLMH 113          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: AK1A1_BOVIN (Alcohol dehydrogenase [NADP+] OS=Bos taurus GN=AKR1A1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.841e-31
Identity = 65/107 (60.75%), Postives = 80/107 (74.77%), Query Frame = 1
Query:  112 VLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKK-FFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            +L+TG K+P +GLGTW+SDPG V  A+  A+  GYRHIDCA IYGNE EIG  LK+      +V RE+L++TSKLWN  H PEDV  AL +TL DLQ++YLDLYLMH
Sbjct:    7 LLHTGQKMPLIGLGTWKSDPGQVKAAIKYALSVGYRHIDCAAIYGNETEIGEALKENVGPGKLVPREELFVTSKLWNTKHHPEDVEPALRKTLADLQLEYLDLYLMH 113          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: AK1A1_PONAB (Alcohol dehydrogenase [NADP+] OS=Pongo abelii GN=AKR1A1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.141e-31
Identity = 65/107 (60.75%), Postives = 79/107 (73.83%), Query Frame = 1
Query:  112 VLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKK-FFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            +L+TG K+P +GLGTW+S+PG V  AV  A+  GYRHIDCA IYGNE EIG  LK+       V RE+L++TSKLWN  H PEDV  AL +TL DLQ++YLDLYLMH
Sbjct:    7 LLHTGQKMPLIGLGTWKSEPGQVKAAVKYALSVGYRHIDCAAIYGNEPEIGEALKEDVGPGKAVPREELFVTSKLWNTKHHPEDVEPALQKTLADLQLEYLDLYLMH 113          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: ALDR_BOVIN (Aldose reductase OS=Bos taurus GN=AKR1B1 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 5.357e-31
Identity = 63/108 (58.33%), Postives = 79/108 (73.15%), Query Frame = 1
Query:  106 HFVLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            + VL TGAK+P +GLGTW+S PG V  AV  AI  GYRHIDCA +Y NE E+GL L+   ++ VVKREDL+I SKLW  YH+ + V  A  +TL DL++DYLDLYL+H
Sbjct:    3 NIVLYTGAKMPILGLGTWKSPPGKVTEAVKVAIDLGYRHIDCAHVYQNENEVGLALQAKLQEQVVKREDLFIVSKLWCTYHDKDLVKGACQKTLSDLKLDYLDLYLIH 110          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: AK1A1_HUMAN (Alcohol dehydrogenase [NADP+] OS=Homo sapiens GN=AKR1A1 PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 5.357e-31
Identity = 65/107 (60.75%), Postives = 79/107 (73.83%), Query Frame = 1
Query:  112 VLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKK-FFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            +L+TG K+P +GLGTW+S+PG V  AV  A+  GYRHIDCA IYGNE EIG  LK+       V RE+L++TSKLWN  H PEDV  AL +TL DLQ++YLDLYLMH
Sbjct:    7 LLHTGQKMPLIGLGTWKSEPGQVKAAVKYALSVGYRHIDCAAIYGNEPEIGEALKEDVGPGKAVPREELFVTSKLWNTKHHPEDVEPALRKTLADLQLEYLDLYLMH 113          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: ALRA_DICDI (Aldose reductase A OS=Dictyostelium discoideum GN=alrA PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.997e-31
Identity = 64/108 (59.26%), Postives = 81/108 (75.00%), Query Frame = 1
Query:  109 FVLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIG-LVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            F L++G KIP VG GTW+++  +VG AV  A+ AGYRHIDCA +Y NEKE+G    KKF  +A VKRED++ITSKLWN +H+ E V  AL+RTL DL + YLDLYL+H
Sbjct:    5 FKLSSGHKIPLVGFGTWKAETTLVGKAVEVALDAGYRHIDCAAVYLNEKEVGEAFTKKFTTEATVKREDVFITSKLWNTFHKKEHVRPALERTLSDLGLQYLDLYLVH 112          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: AK1A1_XENTR (Alcohol dehydrogenase [NADP+] OS=Xenopus tropicalis GN=akr1a1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.997e-31
Identity = 64/115 (55.65%), Postives = 83/115 (72.17%), Query Frame = 1
Query:   88 MANEIRHFVLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFF-EDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            MA  + +  L TG KIP +GLGTW+S PG V +AV  A+  GYRHIDCA +YGNE E+G  +K+    D  + RE++++TSKLWN  H P+DV  AL +TL+DLQ+DYLDLYLMH
Sbjct:    1 MATAVEYETLYTGQKIPLIGLGTWKSAPGQVKDAVKYALGVGYRHIDCAFVYGNETEVGEAIKESVGSDKGLSREEVFVTSKLWNNKHHPDDVECALRKTLQDLQLDYLDLYLMH 115          
BLAST of CF503840 vs. ExPASy Swiss-Prot
Match: ALDR_PIG (Aldose reductase OS=Sus scrofa GN=AKR1B1 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.193e-30
Identity = 65/108 (60.19%), Postives = 77/108 (71.30%), Query Frame = 1
Query:  106 HFVLNTGAKIPSVGLGTWQSDPGVVGNAVAAAIKAGYRHIDCAQIYGNEKEIGLVLKKFFEDAVVKREDLWITSKLWNAYHEPEDVPEALDRTLRDLQIDYLDLYLMH 429
            H VL TGAK+P +GLGTW+S PG V  AV  AI  GYRHIDCA +Y NE E+GL L++  +  VVKREDL+I SKLW   HE   V  A   TLRDL++DYLDLYL+H
Sbjct:    4 HLVLYTGAKMPILGLGTWKSPPGKVTEAVKVAIDLGYRHIDCAHVYQNENEVGLGLQEKLQGQVVKREDLFIVSKLWCTDHEKNLVKGACQTTLRDLKLDYLDLYLIH 111          
The following BLAST results are available for this feature:
BLAST of CF503840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
ALDR_MOUSE6.328e-3257.41Aldose reductase OS=Mus musculus GN=Akr1b1 PE=1 SV... [more]
ALDR_RAT8.265e-3257.41Aldose reductase OS=Rattus norvegicus GN=Akr1b1 PE... [more]
AK1A1_MOUSE1.410e-3159.81Alcohol dehydrogenase [NADP+] OS=Mus musculus GN=A... [more]
AK1A1_BOVIN1.841e-3160.75Alcohol dehydrogenase [NADP+] OS=Bos taurus GN=AKR... [more]
AK1A1_PONAB3.141e-3160.75Alcohol dehydrogenase [NADP+] OS=Pongo abelii GN=A... [more]
ALDR_BOVIN5.357e-3158.33Aldose reductase OS=Bos taurus GN=AKR1B1 PE=1 SV=1[more]
AK1A1_HUMAN5.357e-3160.75Alcohol dehydrogenase [NADP+] OS=Homo sapiens GN=A... [more]
ALRA_DICDI6.997e-3159.26Aldose reductase A OS=Dictyostelium discoideum GN=... [more]
AK1A1_XENTR6.997e-3155.65Alcohol dehydrogenase [NADP+] OS=Xenopus tropicali... [more]
ALDR_PIG1.193e-3060.19Aldose reductase OS=Sus scrofa GN=AKR1B1 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-327 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503840 ID=CF503840; Name=CF503840; organism=Citrus sinensis; type=EST; length=430bp
GCCGGTGCCTGCTTTTACCTCTGGTCCACTCATTCGCTCACGCTTTTTTG
CTCATTGCTCTCTCTCTCTAACGCTTAGCTTTCGAAAATGGCAAATGAGA
TTCGACACTTCGTGCTGAACACCGGAGCCAAAATCCCGTCCGTTGGATTA
GGCACGTGGCAGTCTGATCCTGGTGTCGTCGGCAACGCCGTTGCTGCCGC
CATCAAGGCTGGATACCGACATATTGATTGTGCTCAAATTTACGGCAATG
AAAAGGAGATTGGTTTGGTGCTGAAGAAGTTTTTTGAAGATGCTGTTGTC
AAGCGTGAGGATTTGTGGATTACCTCTAAACTCTGGAATGCTTATCATGA
ACCAGAAGATGTACCAGAGGCATTGGACAGAACTTTGCGGGACTTACAGA
TTGACTACCTTGATCTATACCTTATGCACT
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