CF503844

Overview
NameCF503844
Unique NameCF503844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:588..888. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503844 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 2.410e-33
Identity = 55/93 (59.14%), Postives = 64/93 (68.82%), Query Frame = 3
Query:   21 TGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXXAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGT 299
            +GKCGIA+E SY                       VCDNYY+CP+S TCCC++EYG  C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GT
Sbjct:  331 SGKCGIAVEPSYPLKKGENPPNPGPTPPSPTPPPTVCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGT 423          
BLAST of CF503844 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.545e-32
Identity = 56/99 (56.57%), Postives = 68/99 (68.69%), Query Frame = 3
Query:    3 NVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXXAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGT 299
            N+A + +GKCGIA+E SY                        CD+YY+CPESNTCCC+FEYG  CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GT
Sbjct:  334 NIASS-SGKCGIAIEPSYPIKNGENPPNPGPSPPSPIKPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGT 431          
BLAST of CF503844 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 5.750e-27
Identity = 47/93 (50.54%), Postives = 55/93 (59.14%), Query Frame = 3
Query:   21 TGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXXAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGT 299
            +G CG+A+E SY                        CD Y  C    TCCC+ ++  SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GT
Sbjct:  220 SGLCGLAIEPSYPVKTGPNPPKPAPSPPSPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGT 312          
BLAST of CF503844 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.180e-25
Identity = 49/99 (49.49%), Postives = 55/99 (55.56%), Query Frame = 3
Query:   21 TGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXXA------VCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGT 299
            TGKCGIAM ASY                             VCD+ +SCP  +TCCC F + N C  WGCCP+E ATCC DH SCCP DYP+CN RAGT
Sbjct:  344 TGKCGIAMMASYPTKSGANPPKPSPTPPTPPTPPPPSAPDHVCDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGT 442          
BLAST of CF503844 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 1.241e-21
Identity = 43/93 (46.24%), Postives = 49/93 (52.69%), Query Frame = 3
Query:   21 TGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXXAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGT 299
            TGKCGIAM ASY                        CD Y  CP   TCCC +   N C  WGCCP+E ATCC DH +CCP +YP+CN +A T
Sbjct:  361 TGKCGIAMMASYPIKKGPNPKPSPPSPAPSPPQQ--CDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKART 451          
The following BLAST results are available for this feature:
BLAST of CF503844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ORYA_ORYSJ2.410e-3359.14Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH4.545e-3256.57Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSPL_SOLLC5.750e-2750.54Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ9.180e-2549.49Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ1.241e-2146.24Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-331 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_D09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503844 ID=CF503844; Name=CF503844; organism=Citrus sinensis; type=EST; length=301bp
GTAACGTGGCTGGCACTCTCACGGGCAAGTGTGGAATTGCCATGGAGGCC
TCATATCCCATAAAGAAAGGCCAAAATCCTCCCAACCCCGGACCGTCTCC
TCCATCTCCAACAAAGCCTCCTGCTGTGTGTGACAATTATTACTCTTGCC
CTGAGAGCAACACTTGCTGCTGTGTCTTTGAGTATGGTAACTCTTGCTTT
GCATGGGGATGCTGCCCGCTTGAGGCTGCCACCTGCTGTGATGACCACTA
TAGCTGCTGCCCACATGACTATCCCATCTGTAATGTTCGTGCTGGGACCT
G
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