CF503849

Overview
NameCF503849
Unique NameCF503849
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length345
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7112 contig Csv1_Contig7112:274..618. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF503849 vs. ExPASy Swiss-Prot
Match: U553_DICDI (UPF0553 protein OS=Dictyostelium discoideum GN=DDB_G0288723 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.302e-12
Identity = 39/98 (39.80%), Postives = 51/98 (52.04%), Query Frame = 3 
Query:   75 VRETSAWVATHSSHVLVDSSGIEKVVENIQGS----IPKVEWDYEGIHYFDNG---------PLSVQYLFVLDALNFCFWPDKDLNYDHLASGLKAAL 329
            VRET+AWV+  S HV +++  ++K  E+          K  W     HY D            L+ +Y+ VLD LNFCFWPD +  Y HLA GLK AL
Sbjct:    7 VRETTAWVSGLSKHVKINNEALDKECEDFLNKHKIKAHKEIWADNWFHYCDIDIENKESTFTELTAKYILVLDTLNFCFWPDSEFEYHHLARGLKNAL 104
The following BLAST results are available for this feature:
BLAST of CF503849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
U553_DICDI2.302e-1239.80UPF0553 protein OS=Dictyostelium discoideum GN=DDB... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-336 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_E02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503849 ID=CF503849; Name=CF503849; organism=Citrus sinensis; type=EST; length=345bp
TGAAATCCCATTTAGGGTTTAAAGACAAGACTCACAGGTCGGACCCTCTC
ATTTGAGCCACAGCCATGGACGATGTCAGGGAAACCTCTGCGTGGGTTGC
TACTCACTCCTCTCACGTGCTCGTTGACTCTTCGGGGATTGAGAAGGTCG
TAGAGAATATACAAGGCTCGATTCCTAAAGTGGAGTGGGATTACGAGGGG
ATTCACTACTTTGATAACGGCCCGCTCTCCGTTCAATACCTGTTTGTCTT
GGATGCCTTGAATTTTTGTTTTTGGCCTGATAAGGATCTAAATTATGATC
ATCTAGCATCGGGTCTGAAGGCTGCTCTACAGAATGACAAATCTG
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