CF503868
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 161.384 bits (407), Expect = 1.311e-39 Identity = 77/117 (65.81%), Postives = 92/117 (78.63%), Query Frame = 2 Query: 2 SYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAPPVLPAAKETKTENSIDGSELLSSIST 352 +YQGFVDSPHK+Y NL W LTSQGLRDAF QPG +SAKVI++R +GRSRGFGF+TF +AE + SALD MN VE+EGRPLRLN+A ++AP P ET EN D SELLSS+S+ Sbjct: 208 TYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKAPVSSPPVVETSPENDSDNSELLSSLSS 324
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 5.728e-19 Identity = 37/84 (44.05%), Postives = 64/84 (76.19%), Query Frame = 2 Query: 17 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268 VDS +++Y GNL WG+ L++ F Q ++ AKV+++R +GRSRGFGFVT+ +A+++ A+D++NG++++GR +R++ A ER Sbjct: 204 VDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER 287
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 9.770e-19 Identity = 37/84 (44.05%), Postives = 64/84 (76.19%), Query Frame = 2 Query: 17 VDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268 VDS +++Y GNL WG+ L++ F Q ++ AKV+++R +GRSRGFGFVT+ +++++ A+D++NGV+++GR +R++ A ER Sbjct: 203 VDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286 HSP 2 Score: 67.0106 bits (162), Expect = 3.366e-11 Identity = 30/74 (40.54%), Postives = 48/74 (64.86%), Query Frame = 2 Query: 32 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 253 K++ GNL + + S L F+ + +VI+++ TGRSRGFGFVT T E++++A NG E++GR +R+N Sbjct: 88 KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 161
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.411e-17 Identity = 37/88 (42.05%), Postives = 62/88 (70.45%), Query Frame = 2 Query: 11 GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAP 274 G DS +++Y GNL WG+ L F Q ++ AKV+++R +GRSRGFGFVT+ +AE++ +A+++++GV++ GR +R++ A R P Sbjct: 182 GSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 269 HSP 2 Score: 67.3958 bits (163), Expect = 2.577e-11 Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 2 Query: 32 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 253 KI+ GNL + S L + F+ + +VI+++ TGRSRGFGFVT + E++++A NG E++GR LR+N Sbjct: 88 KIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN 161
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.411e-17 Identity = 37/88 (42.05%), Postives = 62/88 (70.45%), Query Frame = 2 Query: 11 GFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAP 274 G DS +++Y GNL WG+ L F Q ++ AKV+++R +GRSRGFGFVT+ +AE++ +A+++++GV++ GR +R++ A R P Sbjct: 188 GSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPP 275 HSP 2 Score: 67.3958 bits (163), Expect = 2.577e-11 Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 2 Query: 32 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAPPVLPAAKETKTENS 316 KI+ GNL + S L + F+ + +VI+++ TGRSRGFGFVT + E++++A NG E++GR LR+N PP + ENS Sbjct: 88 KIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN----SGPPPEKRENSSFRENS 178
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: ROC2_ARATH (29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP29 PE=1 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 1.320e-15 Identity = 33/84 (39.29%), Postives = 60/84 (71.43%), Query Frame = 2 Query: 23 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAP 274 S +++Y GNL WG+ L + F Q ++ A+VI++R +GRS+GFGFVT +++++Q A++++NG +++GR +R++ A R P Sbjct: 255 SGNRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEAEARPP 338 HSP 2 Score: 72.0182 bits (175), Expect = 1.046e-12 Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 2 Query: 32 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 253 K++ GNL + + S L F+ + +VI+++ TGRSRGFGFVT TA ++++A NG E EGRPLR+N Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVN 173
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.725e-15 Identity = 32/84 (38.10%), Postives = 61/84 (72.62%), Query Frame = 2 Query: 23 SPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAP 274 S +++Y GNL WG+ L F Q ++ A+VI++R +GRS+GFGFVT+++++++Q+A+ +++G +++GR +R++ A R P Sbjct: 202 SGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPP 285 HSP 2 Score: 68.1662 bits (165), Expect = 1.511e-11 Identity = 30/74 (40.54%), Postives = 48/74 (64.86%), Query Frame = 2 Query: 32 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLN 253 K++ GNL + + S L F+ + +VI+++ TGRSRGFGFVT + ++++A NG E++GRPLR+N Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN 165
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.118e-14 Identity = 34/81 (41.98%), Postives = 53/81 (65.43%), Query Frame = 2 Query: 32 KIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANERAP 274 ++Y GNL W + + L F ++ A+V+++R TGRSRGFGFVT ++L A+ A++G +EGR +R+N+A ER P Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPP 325
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: PUB1_YEAST (Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1 OS=Saccharomyces cerevisiae GN=PUB1 PE=1 SV=3) HSP 1 Score: 76.6406 bits (187), Expect = 4.248e-14 Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 2 Query: 2 SYQGFVDSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268 S Q D ++ G+L + + LR+AF+ P LS V+++ TG SRG+GFV+F + +D Q+A+D+M G ++ GRPLR+N A +R Sbjct: 153 SQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241
BLAST of CF503868 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14 Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 2 Query: 20 DSPHKIYAGNLGWGLTSQGLRDAFQGQPGLLSAKVIFERYTGRSRGFGFVTFETAEDLQSALDAMNGVEVEGRPLRLNMANER 268 D ++ + G L W Q L++AF ++ +K+I +R TGRSRGFGFVTF + E ++ A++AMNG +++GR + +N A R Sbjct: 3 DVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85 The following BLAST results are available for this feature:
BLAST of CF503868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
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Sequences
The
following sequences are available for this feature:
EST sequence >CF503868 ID=CF503868; Name=CF503868; organism=Citrus sinensis; type=EST; length=412bpback to top |