CF503875

Overview
NameCF503875
Unique NameCF503875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length216
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503875 vs. ExPASy Swiss-Prot
Match: KCS17_ARATH (3-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana GN=KCS17 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 9.284e-30
Identity = 61/72 (84.72%), Postives = 65/72 (90.28%), Query Frame = 1
Query:    1 YNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSD 216
            YNLGGMGCSAGLISIDLA  LLQV PNSYALV+S ENITLNWY GNDRS L+SNC+FRMGGAA+LLSNR SD
Sbjct:  234 YNLGGMGCSAGLISIDLAKQLLQVQPNSYALVVSTENITLNWYLGNDRSMLLSNCIFRMGGAAVLLSNRSSD 305          
BLAST of CF503875 vs. ExPASy Swiss-Prot
Match: KCS1_ARATH (3-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana GN=KCS1 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.213e-29
Identity = 60/72 (83.33%), Postives = 66/72 (91.67%), Query Frame = 1
Query:    1 YNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSD 216
            YNLGGMGCSAGLISIDLANNLL+ +PNSYA+V+S ENITLNWYFGNDRS L+ NC+FRMGGAAILLSNR  D
Sbjct:  251 YNLGGMGCSAGLISIDLANNLLKANPNSYAVVVSTENITLNWYFGNDRSMLLCNCIFRMGGAAILLSNRRQD 322          
BLAST of CF503875 vs. ExPASy Swiss-Prot
Match: KCS19_ARATH (3-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana GN=KCS19 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.584e-29
Identity = 60/72 (83.33%), Postives = 65/72 (90.28%), Query Frame = 1
Query:    1 YNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSD 216
            YNLGGMGCSAGLISIDLA  +LQV PNSYALV+S ENITLNWY GNDRS L+SNC+FRMGGAA+LLSNR SD
Sbjct:  240 YNLGGMGCSAGLISIDLAKQMLQVQPNSYALVVSTENITLNWYLGNDRSMLLSNCIFRMGGAAVLLSNRSSD 311          
BLAST of CF503875 vs. ExPASy Swiss-Prot
Match: KCS11_ARATH (3-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana GN=KCS11 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.701e-29
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 1
Query:    1 YNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNR 207
            YNLGGMGCSAGLISIDLA +LL   PN+YA+VISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSN+
Sbjct:  229 YNLGGMGCSAGLISIDLAKHLLHSIPNTYAMVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNK 297          
BLAST of CF503875 vs. ExPASy Swiss-Prot
Match: KCS9_ARATH (3-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana GN=KCS9 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 8.992e-25
Identity = 50/72 (69.44%), Postives = 63/72 (87.50%), Query Frame = 1
Query:    1 YNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSD 216
            +NLGGMGCSAG+ISIDLA ++LQVH N+YA+V+S ENIT NWYFGN ++ L+ NCLFR+GG+AILLSN+  D
Sbjct:  237 FNLGGMGCSAGVISIDLAKDMLQVHRNTYAVVVSTENITQNWYFGNKKAMLIPNCLFRVGGSAILLSNKGKD 308          
BLAST of CF503875 vs. ExPASy Swiss-Prot
Match: KCS4_ARATH (3-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana GN=KCS4 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.417e-24
Identity = 48/72 (66.67%), Postives = 62/72 (86.11%), Query Frame = 1
Query:    1 YNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSD 216
            YNLGGMGCSAG+I++DLA ++L VH N+YA+V+S ENIT NWYFGN +S L+ NCLFR+GG+A+LLSN+  D
Sbjct:  241 YNLGGMGCSAGVIAVDLAKDMLLVHRNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGGSAVLLSNKSRD 312          
BLAST of CF503875 vs. ExPASy Swiss-Prot
Match: KCS2_ARATH (Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis thaliana GN=KCS2 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.942e-24
Identity = 45/69 (65.22%), Postives = 63/69 (91.30%), Query Frame = 1
Query:    1 YNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNR 207
            +NLGGMGCSAG+I++DLA+++LQ+H N++ALV+S ENIT NWYFGN ++ L+ NCLFR+GG+A+LLSN+
Sbjct:  211 FNLGGMGCSAGVIAVDLASDMLQIHRNTFALVVSTENITQNWYFGNKKAMLIPNCLFRVGGSAVLLSNK 279          
BLAST of CF503875 vs. ExPASy Swiss-Prot
Match: KCS13_ARATH (3-ketoacyl-CoA synthase 13 OS=Arabidopsis thaliana GN=HIC PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.298e-23
Identity = 49/72 (68.06%), Postives = 61/72 (84.72%), Query Frame = 1
Query:    1 YNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSD 216
            YNL GMGCSAG IS+DLA NLL+ +PN+YA+++S EN+TL+ Y GNDRS LV NCLFR+GGAA++LSNR  D
Sbjct:  189 YNLSGMGCSAGAISVDLATNLLKANPNTYAVIVSTENMTLSMYRGNDRSMLVPNCLFRVGGAAVMLSNRSQD 260          
BLAST of CF503875 vs. ExPASy Swiss-Prot
Match: KCS16_ARATH (3-ketoacyl-CoA synthase 16 OS=Arabidopsis thaliana GN=KCS16 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.215e-23
Identity = 52/71 (73.24%), Postives = 61/71 (85.92%), Query Frame = 1
Query:    4 NLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSD 216
            NLGGMGCSAG+I+ID A +LLQVH N+YALV+S ENIT N Y GN++S LV+NCLFR+GGAAILLSNR  D
Sbjct:  215 NLGGMGCSAGVIAIDAAKSLLQVHRNTYALVVSTENITQNLYMGNNKSMLVTNCLFRIGGAAILLSNRSID 285          
BLAST of CF503875 vs. ExPASy Swiss-Prot
Match: KCS5_ARATH (3-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana GN=KCS5 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.893e-23
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 1
Query:    1 YNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSD 216
            YNL GMGCSA LIS+D+A +LLQVHPNS A++IS E IT N+Y GN+R+ L+ NCLFRMGGAAILLSNR SD
Sbjct:  213 YNLSGMGCSASLISVDVARDLLQVHPNSNAIIISTEIITPNYYKGNERAMLLPNCLFRMGGAAILLSNRRSD 284          
The following BLAST results are available for this feature:
BLAST of CF503875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
KCS17_ARATH9.284e-3084.723-ketoacyl-CoA synthase 17 OS=Arabidopsis thaliana... [more]
KCS1_ARATH1.213e-2983.333-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana ... [more]
KCS19_ARATH1.584e-2983.333-ketoacyl-CoA synthase 19 OS=Arabidopsis thaliana... [more]
KCS11_ARATH2.701e-2988.413-ketoacyl-CoA synthase 11 OS=Arabidopsis thaliana... [more]
KCS9_ARATH8.992e-2569.443-ketoacyl-CoA synthase 9 OS=Arabidopsis thaliana ... [more]
KCS4_ARATH3.417e-2466.673-ketoacyl-CoA synthase 4 OS=Arabidopsis thaliana ... [more]
KCS2_ARATH9.942e-2465.22Probable 3-ketoacyl-CoA synthase 2 OS=Arabidopsis ... [more]
KCS13_ARATH1.298e-2368.063-ketoacyl-CoA synthase 13 OS=Arabidopsis thaliana... [more]
KCS16_ARATH2.215e-2373.243-ketoacyl-CoA synthase 16 OS=Arabidopsis thaliana... [more]
KCS5_ARATH2.893e-2372.223-ketoacyl-CoA synthase 5 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-362 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503875 ID=CF503875; Name=CF503875; organism=Citrus sinensis; type=EST; length=216bp
TACAATTTGGGAGGGATGGGCTGCAGTGCAGGTTTGATTTCAATTGATCT
TGCAAACAATCTTCTTCAGGTTCATCCCAACTCTTATGCATTGGTTATTA
GCATGGAGAACATCACATTGAATTGGTACTTTGGAAATGATCGGTCAAAG
CTTGTTTCAAATTGCTTATTCCGGATGGGAGGGGCTGCAATATTGCTTTC
AAACAGATTCTCTGAC
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