CF503880

Overview
NameCF503880
Unique NameCF503880
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length417
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11494 contig Csv1_Contig11494:61..477. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTM_ARATH (Elongation factor Tu, mitochondrial OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 3.004e-44
Identity = 95/124 (76.61%), Postives = 104/124 (83.87%), Query Frame = 3
Query:   57 MASVVLRNPNSKRIVPFSSQIYSCCRGSL----SISDAFSANETSATRCGPSVNPWWRSMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            MASVVLRNP+SKR+VPFSSQIYS C  S+    SIS +   ++ S++  G S   +WRSMATFTR K HVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH
Sbjct:    1 MASVVLRNPSSKRLVPFSSQIYSRCGASVTSSYSISHSIGGDDLSSSTFGTS--SFWRSMATFTRNKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 122          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_CLOK5 (Elongation factor Tu OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.505e-23
Identity = 52/66 (78.79%), Postives = 56/66 (84.85%), Query Frame = 3
Query:  219 SMATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            S   F RTK HVN+GTIGHVDHGKTTLTAAIT VLA+EGKA A  +DEIDKAPEEK+RGITI TAH
Sbjct:    2 SKEKFERTKPHVNIGTIGHVDHGKTTLTAAITMVLAKEGKASATKYDEIDKAPEEKERGITINTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_CLOAB (Elongation factor Tu OS=Clostridium acetobutylicum GN=tuf PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.111e-22
Identity = 50/62 (80.65%), Postives = 56/62 (90.32%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F RTK HVN+GTIGHVDHGKTTLTAAIT +LA+EGKAKA  ++EIDKAPEEK+RGITI TAH
Sbjct:    6 FERTKPHVNIGTIGHVDHGKTTLTAAITTILAKEGKAKAFNYEEIDKAPEEKERGITINTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_CALS8 (Elongation factor Tu OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=tuf PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.474e-22
Identity = 50/64 (78.12%), Postives = 58/64 (90.62%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F RTK HVN+GTIGHVDHGKTTLTAAITKVLA +GKA+ +A+D+IDKAPEE++RGITI TAH
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTTLTAAITKVLALKGKAQFMAYDQIDKAPEERERGITINTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_ANATD (Elongation factor Tu OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=tuf PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.474e-22
Identity = 50/64 (78.12%), Postives = 58/64 (90.62%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F RTK HVN+GTIGHVDHGKTTLTAAITKVLA +GKA+ +A+D+IDKAPEE++RGITI TAH
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTTLTAAITKVLALKGKAQFMAYDQIDKAPEERERGITINTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_SYMTH (Elongation factor Tu OS=Symbiobacterium thermophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.232e-22
Identity = 49/62 (79.03%), Postives = 57/62 (91.94%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F RTK HVN+GTIGHVDHGKTTLTAAITKVLAE+GKA+ +A+D IDKAPEE++RGITI T+H
Sbjct:    6 FERTKPHVNIGTIGHVDHGKTTLTAAITKVLAEKGKAQFMAYDAIDKAPEERERGITINTSH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_ANADE (Elongation factor Tu OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.232e-22
Identity = 49/62 (79.03%), Postives = 58/62 (93.55%), Query Frame = 3
Query:  231 FTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            F R+K HVNVGTIGHVDHGKTTLTAAITKVLA++G A+ +A+D+IDKAPEE++RGITIATAH
Sbjct:    6 FERSKPHVNVGTIGHVDHGKTTLTAAITKVLAQKGGAQFLAYDQIDKAPEERERGITIATAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_GEOTN (Elongation factor Tu OS=Geobacillus thermodenitrificans (strain NG80-2) GN=tuf PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.221e-22
Identity = 49/64 (76.56%), Postives = 58/64 (90.62%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F RTK HVN+GTIGHVDHGKTTLTAAIT VLA++GKA+A A+D+ID APEE++RGITI+TAH
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKQGKAEARAYDQIDAAPEERERGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_GEOKA (Elongation factor Tu OS=Geobacillus kaustophilus GN=tuf PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.221e-22
Identity = 49/64 (76.56%), Postives = 58/64 (90.62%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F RTK HVN+GTIGHVDHGKTTLTAAIT VLA++GKA+A A+D+ID APEE++RGITI+TAH
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKQGKAEAKAYDQIDAAPEERERGITISTAH 67          
BLAST of CF503880 vs. ExPASy Swiss-Prot
Match: EFTU_BACST (Elongation factor Tu OS=Bacillus stearothermophilus GN=tuf PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.221e-22
Identity = 49/64 (76.56%), Postives = 58/64 (90.62%), Query Frame = 3
Query:  225 ATFTRTKLHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAIAFDEIDKAPEEKKRGITIATAH 416
            A F RTK HVN+GTIGHVDHGKTTLTAAIT VLA++GKA+A A+D+ID APEE++RGITI+TAH
Sbjct:    4 AKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKQGKAEAKAYDQIDAAPEERERGITISTAH 67          
The following BLAST results are available for this feature:
BLAST of CF503880 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTM_ARATH3.004e-4476.61Elongation factor Tu, mitochondrial OS=Arabidopsis... [more]
EFTU_CLOK58.505e-2378.79Elongation factor Tu OS=Clostridium kluyveri (stra... [more]
EFTU_CLOAB1.111e-2280.65Elongation factor Tu OS=Clostridium acetobutylicum... [more]
EFTU_CALS82.474e-2278.13Elongation factor Tu OS=Caldicellulosiruptor sacch... [more]
EFTU_ANATD2.474e-2278.13Elongation factor Tu OS=Anaerocellum thermophilum ... [more]
EFTU_SYMTH3.232e-2279.03Elongation factor Tu OS=Symbiobacterium thermophil... [more]
EFTU_ANADE3.232e-2279.03Elongation factor Tu OS=Anaeromyxobacter dehalogen... [more]
EFTU_GEOTN4.221e-2276.56Elongation factor Tu OS=Geobacillus thermodenitrif... [more]
EFTU_GEOKA4.221e-2276.56Elongation factor Tu OS=Geobacillus kaustophilus G... [more]
EFTU_BACST4.221e-2276.56Elongation factor Tu OS=Bacillus stearothermophilu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-367 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503880 ID=CF503880; Name=CF503880; organism=Citrus sinensis; type=EST; length=417bp
GTTTTACATACAGCTCGTTTTGAACATACTTTCTCTCACTCGCTCACTCG
GAATCAATGGCTTCGGTGGTTCTTAGAAACCCTAACTCCAAGAGAATTGT
GCCGTTTTCATCCCAAATCTACTCTTGCTGCCGCGGCTCTCTCTCCATCT
CCGACGCTTTCTCCGCAAATGAAACTTCTGCTACTCGCTGCGGCCCCTCT
GTTAACCCCTGGTGGAGATCCATGGCCACCTTCACTCGCACAAAGCTTCA
CGTGAATGTGGGAACAATTGGACACGTTGATCATGGGAAGACTACACTTA
CTGCTGCGATTACCAAGGTGCTAGCAGAAGAAGGGAAAGCAAAAGCTATT
GCCTTTGATGAAATTGACAAGGCCCCTGAAGAGAAGAAGAGAGGAATTAC
TATTGCAACGGCCCATG
back to top