CF503888

Overview
NameCF503888
Unique NameCF503888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length396
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503888 vs. ExPASy Swiss-Prot
Match: LPAT2_BRAOL (1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Brassica oleracea GN=LPAT2 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 2.786e-42
Identity = 84/117 (71.79%), Postives = 93/117 (79.49%), Query Frame = 1
Query:   46 VPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLP 396
            VPLG+LFFISGLVVNL+QAVC+V IRPLSKNTYR+INR                 AGVKI++F D ET+  MGKEHALVV NH+SDIDWLVGW+LAQRSGCLGS LAVMKKSSKFLP
Sbjct:   10 VPLGILFFISGLVVNLLQAVCYVLIRPLSKNTYRKINRVVAETLWLELVWIVDWWAGVKIQVFADDETFNRMGKEHALVVCNHRSDIDWLVGWILAQRSGCLGSALAVMKKSSKFLP 126          
BLAST of CF503888 vs. ExPASy Swiss-Prot
Match: LPAT2_ARATH (1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Arabidopsis thaliana GN=LPAT2 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 4.752e-42
Identity = 84/117 (71.79%), Postives = 91/117 (77.78%), Query Frame = 1
Query:   46 VPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLP 396
            VPLGLLFFISGL VNL QAVC+V IRPLSKNTYR+INR                 AGVKI++F D ET+  MGKEHALVV NH+SDIDWLVGW+LAQRSGCLGS LAVMKKSSKFLP
Sbjct:    9 VPLGLLFFISGLAVNLFQAVCYVLIRPLSKNTYRKINRVVAETLWLELVWIVDWWAGVKIQVFADNETFNRMGKEHALVVCNHRSDIDWLVGWILAQRSGCLGSALAVMKKSSKFLP 125          
BLAST of CF503888 vs. ExPASy Swiss-Prot
Match: LPAT2_BRANA (1-acyl-sn-glycerol-3-phosphate acyltransferase 2 OS=Brassica napus GN=LPAT2 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 6.207e-42
Identity = 82/117 (70.09%), Postives = 93/117 (79.49%), Query Frame = 1
Query:   46 VPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLP 396
            VPLG+LFFISGLVVNL+QAVC+V +RP+SKNTYR+INR                 AGVKI++F D ET+  MGKEHALVV NH+SDIDWLVGW+LAQRSGCLGS LAVMKKSSKFLP
Sbjct:    9 VPLGILFFISGLVVNLLQAVCYVLVRPMSKNTYRKINRVVAETLWLELVWIVDWWAGVKIQVFADDETFNRMGKEHALVVCNHRSDIDWLVGWILAQRSGCLGSALAVMKKSSKFLP 125          
BLAST of CF503888 vs. ExPASy Swiss-Prot
Match: LPAT_MAIZE (1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1 OS=Zea mays GN=PLS1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.171e-40
Identity = 80/117 (68.38%), Postives = 91/117 (77.78%), Query Frame = 1
Query:   46 VPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLP 396
            +PLGLLF +SGL+VN IQAV FVTIRP SK+ YRRINR                 AGVK++L  D ETYR MGKEHAL++SNH+SDIDWL+GW+LAQRSGCLGSTLAVMKKSSKFLP
Sbjct:   10 LPLGLLFLLSGLIVNAIQAVLFVTIRPFSKSFYRRINRFLAELLWLQLVWVVDWWAGVKVQLHADEETYRSMGKEHALIISNHRSDIDWLIGWILAQRSGCLGSTLAVMKKSSKFLP 126          
BLAST of CF503888 vs. ExPASy Swiss-Prot
Match: LPAT3_ARATH (1-acyl-sn-glycerol-3-phosphate acyltransferase 3 OS=Arabidopsis thaliana GN=LPAT3 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 2.793e-34
Identity = 66/117 (56.41%), Postives = 87/117 (74.36%), Query Frame = 1
Query:   46 VPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLP 396
            +P+G+LF ISGL+VN+IQ V F+ +RP S++ YRRIN+                 A +KI L+VD ET  L+GKEHALV+SNH+SDIDWL+GWV+AQR GCLGS+LA+MKK +K+LP
Sbjct:   10 IPVGVLFLISGLIVNIIQLVFFIIVRPFSRSLYRRINKNVAELLWLQLIWLFDWWACIKINLYVDAETLELIGKEHALVLSNHRSDIDWLIGWVMAQRVGCLGSSLAIMKKEAKYLP 126          
BLAST of CF503888 vs. ExPASy Swiss-Prot
Match: PLCC_PONAB (1-acyl-sn-glycerol-3-phosphate acyltransferase gamma OS=Pongo abelii GN=AGPAT3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.850e-16
Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = 1
Query:   52 LGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLP 396
            +G +F +SGLV+N +Q +C + + P+SK  YRR+N                  +  +  LF D+ T    GKEHA+++ NH  +ID+L GW + +R G LGS+  + KK   ++P
Sbjct:   17 VGFVFVVSGLVINFVQ-LCTLALWPVSKQLYRRLNCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVERFGKEHAVIILNHNFEIDFLCGWTMCERFGVLGSSKVLAKKELLYVP 130          
BLAST of CF503888 vs. ExPASy Swiss-Prot
Match: PLCC_HUMAN (1-acyl-sn-glycerol-3-phosphate acyltransferase gamma OS=Homo sapiens GN=AGPAT3 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.850e-16
Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = 1
Query:   52 LGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLP 396
            +G +F +SGLV+N +Q +C + + P+SK  YRR+N                  +  +  LF D+ T    GKEHA+++ NH  +ID+L GW + +R G LGS+  + KK   ++P
Sbjct:   17 VGFVFVVSGLVINFVQ-LCTLALWPVSKQLYRRLNCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVERFGKEHAVIILNHNFEIDFLCGWTMCERFGVLGSSKVLAKKELLYVP 130          
BLAST of CF503888 vs. ExPASy Swiss-Prot
Match: PLCD_BOVIN (1-acyl-sn-glycerol-3-phosphate acyltransferase delta OS=Bos taurus GN=AGPAT4 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.882e-14
Identity = 39/112 (34.82%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   61 LFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLP 396
            +F +SGL++N IQ +C + + P++K  +R+IN                  +G +  ++ D   Y   GKE+A+VV NHK +ID+L GW LA+R G LG +  + KK   ++P
Sbjct:   20 VFIVSGLIINTIQ-LCTLLLWPVNKQLFRKINCRLSYCVSSQLVMLLEWWSGTECVIYTDPRAYPKYGKENAIVVLNHKFEIDFLCGWSLAERFGVLGGSKVLAKKELAYVP 130          
BLAST of CF503888 vs. ExPASy Swiss-Prot
Match: PLCC_MOUSE (1-acyl-sn-glycerol-3-phosphate acyltransferase gamma OS=Mus musculus GN=Agpat3 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.458e-14
Identity = 39/115 (33.91%), Postives = 62/115 (53.91%), Query Frame = 1
Query:   52 LGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLP 396
            +G +F +SGL++N  Q +C + + P+SK+ YRRIN                  +  +  LF D+ T    GKEH +V+ NH  +ID+L GW + +R G LGS+  + K+    +P
Sbjct:   17 IGFVFVVSGLIINFTQ-LCTLALWPISKHLYRRINCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVDHFGKEHVVVILNHNFEIDFLCGWTMCERFGVLGSSKVLAKRELLCVP 130          
BLAST of CF503888 vs. ExPASy Swiss-Prot
Match: PLCD_RAT (1-acyl-sn-glycerol-3-phosphate acyltransferase delta OS=Rattus norvegicus GN=Agpat4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.475e-14
Identity = 40/112 (35.71%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   61 LFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRXXXXXXXXXXXXXXXXXAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLP 396
            +F  SGL+VN IQ +C + I P++K  +R+IN                  +G +  ++ D +     GKE+A+VV NHK +ID+L GW LA+R G LG++  + KK   ++P
Sbjct:   20 VFIASGLIVNAIQ-LCTLVIWPINKQLFRKINARLCYCVSSQLVMLLEWWSGTECTIYTDPKASPHYGKENAIVVLNHKFEIDFLCGWSLAERLGILGNSKVLAKKELAYVP 130          
The following BLAST results are available for this feature:
BLAST of CF503888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
LPAT2_BRAOL2.786e-4271.791-acyl-sn-glycerol-3-phosphate acyltransferase 2 O... [more]
LPAT2_ARATH4.752e-4271.791-acyl-sn-glycerol-3-phosphate acyltransferase 2 O... [more]
LPAT2_BRANA6.207e-4270.091-acyl-sn-glycerol-3-phosphate acyltransferase 2 O... [more]
LPAT_MAIZE1.171e-4068.381-acyl-sn-glycerol-3-phosphate acyltransferase PLS... [more]
LPAT3_ARATH2.793e-3456.411-acyl-sn-glycerol-3-phosphate acyltransferase 3 O... [more]
PLCC_PONAB5.850e-1634.781-acyl-sn-glycerol-3-phosphate acyltransferase gam... [more]
PLCC_HUMAN5.850e-1634.781-acyl-sn-glycerol-3-phosphate acyltransferase gam... [more]
PLCD_BOVIN1.882e-1434.821-acyl-sn-glycerol-3-phosphate acyltransferase del... [more]
PLCC_MOUSE2.458e-1433.911-acyl-sn-glycerol-3-phosphate acyltransferase gam... [more]
PLCD_RAT5.475e-1435.711-acyl-sn-glycerol-3-phosphate acyltransferase del... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-375 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503888 ID=CF503888; Name=CF503888; organism=Citrus sinensis; type=EST; length=396bp
AAAAGAATAGCAGAGGCCATGGCGATAGCAGCGGCAGCTGTCATCGTCCC
ATTGGGCCTTCTCTTCTTCATTTCAGGCCTCGTTGTCAATCTCATTCAGG
CAGTTTGCTTTGTGACTATTCGCCCTCTATCGAAGAACACGTACAGGAGA
ATCAATAGATGGGTAGCGGAATTGTTATGGCTGGAACTTGTATGGATAGT
TGATTGGTGGGCTGGAGTTAAGATCAAACTTTTCGTAGACCGTGAAACGT
ATCGATTAATGGGTAAAGAACATGCACTTGTTGTTTCCAATCACAAAAGT
GACATTGACTGGCTTGTTGGGTGGGTTTTGGCTCAACGGTCAGGTTGTCT
TGGTAGCACATTGGCCGTTATGAAGAAATCATCAAAATTTCTTCCG
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