CF503889

Overview
NameCF503889
Unique NameCF503889
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length408
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11536 contig Csv1_Contig11536:458..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAP_DICDI (Poly(A) polymerase OS=Dictyostelium discoideum GN=papA PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.549e-31
Identity = 65/127 (51.18%), Postives = 87/127 (68.50%), Query Frame = 1
Query:    1 QRGYTDQMVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDI-DISQMSVLNNVDEQTVRSLNGCRV 378
            ++GY +Q   +  A IFTFGSYRLG HGPG+DID LCVGP ++ R  DFF  L DIL    E++E   + DA VPV+   F GI IDL+YA ++L  +PE++ D+   S L N+DE+++ SLNGCRV
Sbjct:  115 KKGYPEQTASEVVAKIFTFGSYRLGVHGPGSDIDTLCVGPKHIMR-SDFFDDLSDILKVHPEITEFTTVKDAFVPVITMVFSGIPIDLIYAKLALTAIPEELNDLIDESFLKNIDEKSILSLNGCRV 240          
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAP_YEAST (Poly(A) polymerase OS=Saccharomyces cerevisiae GN=PAP1 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.241e-30
Identity = 62/126 (49.21%), Postives = 87/126 (69.05%), Query Frame = 1
Query:    1 QRGYTDQMVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378
            ++  +D M  DA   IFT+GSYRLG HGPG+DID L V P +V+RE DFF +   +L E +E+ E+ P+PDA VP++K KF GISIDL+ A +    VP  + +S  ++L N+DE+ +R+LNG RV
Sbjct:   69 KKNMSDGMARDAGGKIFTYGSYRLGVHGPGSDIDTLVVVPKHVTRE-DFFTVFDSLLRERKELDEIAPVPDAFVPIIKIKFSGISIDLICARLDQPQVPLSLTLSDKNLLRNLDEKDLRALNGTRV 193          
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAPOB_MOUSE (Poly(A) polymerase beta OS=Mus musculus GN=Papolb PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 1.613e-29
Identity = 63/125 (50.40%), Postives = 84/125 (67.20%), Query Frame = 1
Query:    4 RGYTDQMVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378
            R     ++E+    IFTFGSYRLG H  GADIDALCV P +V R  DFF   +D L   EEV +L+ + +A VPV+K  F GI ID+L+A ++L  +PED+D+   S+L N+D + +RSLNGCRV
Sbjct:   83 RNLPQAVIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRN-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRV 206          
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAP_SCHPO (Poly(A) polymerase pla1 OS=Schizosaccharomyces pombe GN=pla1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.107e-29
Identity = 63/121 (52.07%), Postives = 90/121 (74.38%), Query Frame = 1
Query:   16 DQMVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378
            ++M  +A   IFT+GSYRLG +GPG+DID L V P +VSR+ +FF  L  +L E EEV++L  +PDA+VP++KFKF GISIDL++A +S+  VP D+++S  ++L  V+E+ V SLNG RV
Sbjct:   73 EKMANEAGGKIFTYGSYRLGVYGPGSDIDTLVVVPKHVSRD-NFFQDLEPMLREREEVTDLAAVPDAYVPIIKFKFLGISIDLIFARLSVPRVPRDLELSDNNLLKGVEERCVLSLNGTRV 192          
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAPOA_MOUSE (Poly(A) polymerase alpha OS=Mus musculus GN=Papola PE=1 SV=4)

HSP 1 Score: 127.102 bits (318), Expect = 2.751e-29
Identity = 62/119 (52.10%), Postives = 83/119 (69.75%), Query Frame = 1
Query:   22 MVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378
            ++E+    IFTFGSYRLG H  GADIDALCV P +V R  DFF   +D L   EEV +L+ + +A VPV+K  F GI ID+L+A ++L  +PED+D+   S+L N+D + +RSLNGCRV
Sbjct:   89 VIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRV 206          
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAPOA_HUMAN (Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA PE=1 SV=4)

HSP 1 Score: 127.102 bits (318), Expect = 2.751e-29
Identity = 62/119 (52.10%), Postives = 83/119 (69.75%), Query Frame = 1
Query:   22 MVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378
            ++E+    IFTFGSYRLG H  GADIDALCV P +V R  DFF   +D L   EEV +L+ + +A VPV+K  F GI ID+L+A ++L  +PED+D+   S+L N+D + +RSLNGCRV
Sbjct:   89 VIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRV 206          
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAPOA_BOVIN (Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA PE=1 SV=3)

HSP 1 Score: 127.102 bits (318), Expect = 2.751e-29
Identity = 62/119 (52.10%), Postives = 83/119 (69.75%), Query Frame = 1
Query:   22 MVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378
            ++E+    IFTFGSYRLG H  GADIDALCV P +V R  DFF   +D L   EEV +L+ + +A VPV+K  F GI ID+L+A ++L  +PED+D+   S+L N+D + +RSLNGCRV
Sbjct:   89 VIENVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVDRS-DFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRV 206          
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAPO1_XENLA (Poly(A) polymerase alpha-A (Fragment) OS=Xenopus laevis GN=papola-A PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.594e-29
Identity = 61/119 (51.26%), Postives = 83/119 (69.75%), Query Frame = 1
Query:   22 MVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378
            ++E+    IFTFG YRLG H  GADIDALCV P +V R  DFF   +D L + EEV +L+ + +A VPV+K  F GI ID+L+A ++L  +PED+D+   S+L N+D + +RSLNGCRV
Sbjct:   71 VIENVGGKIFTFGPYRLGVHTKGADIDALCVAPRHVDRS-DFFSSFYDKLKQQEEVKDLRSVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRV 188          
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAP_CANAL (Poly(A) polymerase PAPalpha OS=Candida albicans GN=PAPALPHA PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.693e-29
Identity = 59/125 (47.20%), Postives = 89/125 (71.20%), Query Frame = 1
Query:    4 RGYTDQMVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378
            +  +D M +DA   +FTFGSYRLG +GPG+DID L V P +V+R+ DFF +  DI+ +  E+ E+  +PDA+VP++K +F GISIDL+ A +++  VP D+ +   ++L N+DE+ +RSLNG RV
Sbjct:   69 KNMSDSMAQDAGGKVFTFGSYRLGVYGPGSDIDTLVVVPKHVTRD-DFFSVFADIIRKRPELEEIACVPDAYVPIIKLEFDGISIDLIMARLNIPRVPLDLTLDDKNLLKNLDEKDLRSLNGTRV 192          
BLAST of CF503889 vs. ExPASy Swiss-Prot
Match: PAPOB_HUMAN (Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.130e-29
Identity = 62/119 (52.10%), Postives = 83/119 (69.75%), Query Frame = 1
Query:   22 MVEDANAVIFTFGSYRLGAHGPGADIDALCVGPSYVSREEDFFIILHDILAEMEEVSELQPIPDAHVPVMKFKFQGISIDLLYASISLLVVPEDIDISQMSVLNNVDEQTVRSLNGCRV 378
            ++E+    IFTFGSYRLG H  GADIDALCV PS+V R  DFF   +  L   EEV +L+ + +A VPV+K  F GI ID+L+A ++L  +PED+D+   S+L N+D + +RSLNGCRV
Sbjct:   89 VIENVGGKIFTFGSYRLGVHTKGADIDALCVAPSHVDRS-DFFTSFYAKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPEDLDLRDDSLLKNLDIRCIRSLNGCRV 206          
The following BLAST results are available for this feature:
BLAST of CF503889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
PAP_DICDI6.549e-3151.18Poly(A) polymerase OS=Dictyostelium discoideum GN=... [more]
PAP_YEAST7.241e-3049.21Poly(A) polymerase OS=Saccharomyces cerevisiae GN=... [more]
PAPOB_MOUSE1.613e-2950.40Poly(A) polymerase beta OS=Mus musculus GN=Papolb ... [more]
PAP_SCHPO2.107e-2952.07Poly(A) polymerase pla1 OS=Schizosaccharomyces pom... [more]
PAPOA_MOUSE2.751e-2952.10Poly(A) polymerase alpha OS=Mus musculus GN=Papola... [more]
PAPOA_HUMAN2.751e-2952.10Poly(A) polymerase alpha OS=Homo sapiens GN=PAPOLA... [more]
PAPOA_BOVIN2.751e-2952.10Poly(A) polymerase alpha OS=Bos taurus GN=PAPOLA P... [more]
PAPO1_XENLA3.594e-2951.26Poly(A) polymerase alpha-A (Fragment) OS=Xenopus l... [more]
PAP_CANAL4.693e-2947.20Poly(A) polymerase PAPalpha OS=Candida albicans GN... [more]
PAPOB_HUMAN6.130e-2952.10Poly(A) polymerase beta OS=Homo sapiens GN=PAPOLB ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-376 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-10_H12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503889 ID=CF503889; Name=CF503889; organism=Citrus sinensis; type=EST; length=408bp
CAAAGGGGATATACAGATCAGATGGTGGAGGATGCAAATGCTGTGATTTT
TACTTTTGGGTCTTATCGCTTGGGGGCACATGGTCCAGGGGCAGATATAG
ATGCTTTATGTGTTGGGCCTTCTTATGTGAGTCGTGAGGAAGATTTCTTC
ATTATATTGCATGATATACTGGCTGAAATGGAAGAAGTTAGTGAACTTCA
ACCAATTCCAGATGCTCATGTTCCAGTTATGAAATTCAAGTTCCAGGGAA
TCTCCATTGATCTTCTTTATGCAAGTATTTCTCTTCTGGTTGTTCCAGAA
GACATAGACATTTCGCAAATGTCTGTGCTTAATAATGTTGATGAGCAAAC
TGTTCGAAGTCTTAATGGATGCAGGGTTGCCGGATCAAATTCTCAAACAC
GTTCCAAA
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