CF503890

Overview
NameCF503890
Unique NameCF503890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig504 contig Csv1_Contig504:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: IVD_ARATH (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=IVD PE=1 SV=2)

HSP 1 Score: 328.946 bits (842), Expect = 1.530e-89
Identity = 163/215 (75.81%), Postives = 183/215 (85.12%), Query Frame = 1
Query:   49 MQRLLGARSLCASFFTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            MQR   ARS+   +  K ++ S +  S+SLLFDDTQLQFKESV +FA++NIAP A  ID++NSFP+DVNLWKLMG FNLHGITAP+E          HCIAMEEISRASGSV LSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGEHVGALAMSEPNAGSDVVGMKCKA++VDGGYI+NGNKMWCTNGP A+TLVVYAKTD KAGSKGITAFII
Sbjct:    1 MQRFFSARSILG-YAVKTRRRSFSSRSSSLLFDDTQLQFKESVSKFAQDNIAPHAERIDKTNSFPKDVNLWKLMGEFNLHGITAPEEYGGLGLGYLYHCIAMEEISRASGSVALSYGAHSNLCINQLVRNGTAAQKEKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKAEKVDGGYILNGNKMWCTNGPSAETLVVYAKTDTKAGSKGITAFII 214          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: IVD2_SOLTU (Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fragment) OS=Solanum tuberosum GN=IVD2 PE=1 SV=1)

HSP 1 Score: 310.842 bits (795), Expect = 4.313e-84
Identity = 154/197 (78.17%), Postives = 167/197 (84.77%), Query Frame = 1
Query:  103 QKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            QK   A  STSLLFDDTQ QFKESV QFA+ENIAP A  ID++N FPQDVNLWKLMG+FNL GIT P+E          HCIAMEEISRASGSVGLSYGAH+NLCINQLVR+G+  QK KYLPKLISGEHVGALAMSEP+AGSDVV MKCKADRV+GGY++NGNKMWCTNGP AQTLVVYAKTD+ A SKGITAFII
Sbjct:   10 QKPQFAAFSTSLLFDDTQKQFKESVAQFAQENIAPHAEKIDRTNYFPQDVNLWKLMGDFNLLGITVPEEYGGLGLGYLYHCIAMEEISRASGSVGLSYGAHTNLCINQLVRNGTHEQKQKYLPKLISGEHVGALAMSEPDAGSDVVSMKCKADRVEGGYVLNGNKMWCTNGPTAQTLVVYAKTDVTASSKGITAFII 206          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: IVD1_SOLTU (Isovaleryl-CoA dehydrogenase 1, mitochondrial OS=Solanum tuberosum GN=IVD1 PE=2 SV=1)

HSP 1 Score: 310.071 bits (793), Expect = 7.357e-84
Identity = 153/218 (70.18%), Postives = 177/218 (81.19%), Query Frame = 1
Query:   49 MQRLLGARSLCASF---FTKKQKHSAAFSSTSLLFDDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            M +L   RSL ++    F   Q   AAFS TSLL DDTQ QFKESV +FA+ENIAP A  ID++NSFP+++NLWKLMG+FNLHGITAP+E          HCIA+EEISRASG+V +SYG  SN+CINQLVR+G+P QK KYLPKLISG+H+GALAMSEPNAGSDVV MKC+ADRVDGGY++NGNKMWCTNGPVA TL+VYAKTD  AGSKGITAFII
Sbjct:    1 MHKLFAVRSLSSAIAKNFKSLQNQQAAFS-TSLLLDDTQKQFKESVAKFAQENIAPYAEKIDRTNSFPKEINLWKLMGDFNLHGITAPEEYGGLNLGYLYHCIALEEISRASGAVAVSYGVQSNVCINQLVRNGTPDQKQKYLPKLISGDHIGALAMSEPNAGSDVVSMKCRADRVDGGYVLNGNKMWCTNGPVANTLIVYAKTDTTAGSKGITAFII 217          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: IVD_PONAB (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pongo abelii GN=IVD PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.635e-57
Identity = 110/184 (59.78%), Postives = 137/184 (74.46%), Query Frame = 1
Query:  148 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGITAFII 693
            + Q Q +++V +F +E++AP+A  ID+SN F      WK +GN  + GITAP +          H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A  L+VYAKTD+ A   S+GITAFI+
Sbjct:   44 EEQRQLRQTVAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIV 227          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: IVD_HUMAN (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Homo sapiens GN=IVD PE=1 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.870e-57
Identity = 109/184 (59.24%), Postives = 137/184 (74.46%), Query Frame = 1
Query:  148 DTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGITAFII 693
            + Q Q ++++ +F +E++AP+A  ID+SN F      WK +GN  + GITAP +          H + MEEISRASG+VGLSYGAHSNLCINQLVR+G+ AQK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    YI+NGNK W TNGP A  L+VYAKTD+ A   S+GITAFI+
Sbjct:   44 EEQRQLRQTMAKFLQEHLAPKAQEIDRSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCINQLVRNGNEAQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGNHYILNGNKFWITNGPDADVLIVYAKTDLAAVPASRGITAFIV 227          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: IVD_MOUSE (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus musculus GN=Ivd PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.913e-56
Identity = 107/185 (57.84%), Postives = 136/185 (73.51%), Query Frame = 1
Query:  145 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGITAFII 693
            ++ Q Q + ++ +F +EN+AP+A  IDQ+N F      WK +G+  + GITAP +          H + MEEISRASG+VGLSYGAHSNLC+NQ+VR+G+ AQK+KYLPKLISGE +GALAMSEPNAGSDVV MK KA++    Y++NGNK W TNGP A  LVVYAKTD+ A   S+GITAFI+
Sbjct:   44 NEEQKQLRHTISKFLQENLAPKAQEIDQTNDFKNLREFWKQLGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASGAVGLSYGAHSNLCVNQIVRNGNEAQKEKYLPKLISGEFIGALAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADILVVYAKTDLTAVPASRGITAFIV 228          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: IVD_RAT (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Ivd PE=1 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 6.490e-56
Identity = 107/185 (57.84%), Postives = 135/185 (72.97%), Query Frame = 1
Query:  145 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGITAFII 693
            ++ Q Q + ++ +F +EN+AP+A  IDQSN F      WK +G+  + GITAP +          H + MEEISRAS +VGLSYGAHSNLCINQ+VR+G+ AQK+KYLPKLISGE +GALAMSEPNAGSDVV M+ KA++    Y++NGNK W TNGP A  LVVYAKTD+ A   S+GITAFI+
Sbjct:   44 NEEQKQLRHTISKFVQENLAPKAQEIDQSNDFKNLREFWKQLGSLGVLGITAPVQYGGSGLGYLEHVLVMEEISRASAAVGLSYGAHSNLCINQIVRNGNEAQKEKYLPKLISGEFIGALAMSEPNAGSDVVSMRLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAKTDLTAVPASRGITAFIV 228          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: IVD_BOVIN (Isovaleryl-CoA dehydrogenase, mitochondrial OS=Bos taurus GN=IVD PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.476e-56
Identity = 107/185 (57.84%), Postives = 136/185 (73.51%), Query Frame = 1
Query:  145 DDTQLQFKESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKA--GSKGITAFII 693
            ++ Q Q +++V +F +E++AP+A  IDQSN F      WK +GN  + GITAP +          + + MEEISR SG+VGLSYGAHSNLCINQ+VR+G+  QK+KYLPKLISGE++GALAMSEPNAGSDVV MK KA++    Y++NGNK W TNGP A  LVVYAKTD+ A   S+GITAFI+
Sbjct:   46 NEEQKQLRQTVAKFLQEHLAPQAQEIDQSNEFKNLREFWKQLGNLGVLGITAPVQYGGSGLGFLENVLVMEEISRVSGAVGLSYGAHSNLCINQIVRNGNETQKEKYLPKLISGEYIGALAMSEPNAGSDVVSMKLKAEKKGDHYVLNGNKFWITNGPDADVLVVYAKTDVTAVPASRGITAFIV 230          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACDS_CLOAB (Acyl-CoA dehydrogenase, short-chain specific OS=Clostridium acetobutylicum GN=bcd PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.117e-30
Identity = 70/176 (39.77%), Postives = 105/176 (59.66%), Query Frame = 1
Query:  166 KESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            ++ V +FA   + P AA ID++  FP + N+ K MG + + GI   +E          + IA+EE+S+  G+ G+   AH++LC + +  HG+  QK KYL  L  GE +GA  ++EPNAG+D    +  A      Y+ING+K++ TNG VA T V++A TD   G+KGI+AFII
Sbjct:   13 RQMVREFAENEVKPIAAEIDETERFPME-NV-KKMGQYGMMGIPFSKEYGGAGGDVLSYIIAVEELSKVCGTTGVILSAHTSLCASLINEHGTEEQKQKYLVPLAKGEKIGAYGLTEPNAGTDSGAQQTVAVLEGDHYVINGSKIFITNGGVADTFVIFAMTDRTKGTKGISAFII 186          
BLAST of CF503890 vs. ExPASy Swiss-Prot
Match: ACDA_BACSU (Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=acdA PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.507e-28
Identity = 67/176 (38.07%), Postives = 102/176 (57.95%), Query Frame = 1
Query:  166 KESVGQFARENIAPRAANIDQSNSFPQDVNLWKLMGNFNLHGITAPQEXXXXXXXXXXHCIAMEEISRASGSVGLSYGAHSNLCINQLVRHGSPAQKDKYLPKLISGEHVGALAMSEPNAGSDVVGMKCKADRVDGGYIINGNKMWCTNGPVAQTLVVYAKTDIKAGSKGITAFII 693
            ++ V  FA+  +AP AA  D+   F  D  L++ M N  L GI  P++          + IA+EE+S+   S G++  AH +LC   L   G+  QK +YL +L  GE +GA A++E  +GSD   MK  A+R+   Y++NG+K++ TNG VA   +V+A TD +   KG+TAFI+
Sbjct:   13 RKLVRDFAKHEVAPTAAERDEQERF--DRELFREMANLGLTGIPWPEDYGGIGSDYLAYVIAVEELSKVCASTGVTLSAHISLCSWPLFAFGTEEQKTEYLTQLALGEKIGAFALTEAGSGSDAGSMKTTAERIGDDYVLNGSKVFITNGGVADIYIVFAVTDPEKKKKGVTAFIV 186          
The following BLAST results are available for this feature:
BLAST of CF503890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
IVD_ARATH1.530e-8975.81Isovaleryl-CoA dehydrogenase, mitochondrial OS=Ara... [more]
IVD2_SOLTU4.313e-8478.17Isovaleryl-CoA dehydrogenase 2, mitochondrial (Fra... [more]
IVD1_SOLTU7.357e-8470.18Isovaleryl-CoA dehydrogenase 1, mitochondrial OS=S... [more]
IVD_PONAB2.635e-5759.78Isovaleryl-CoA dehydrogenase, mitochondrial OS=Pon... [more]
IVD_HUMAN5.870e-5759.24Isovaleryl-CoA dehydrogenase, mitochondrial OS=Hom... [more]
IVD_MOUSE2.913e-5657.84Isovaleryl-CoA dehydrogenase, mitochondrial OS=Mus... [more]
IVD_RAT6.490e-5657.84Isovaleryl-CoA dehydrogenase, mitochondrial OS=Rat... [more]
IVD_BOVIN8.476e-5657.84Isovaleryl-CoA dehydrogenase, mitochondrial OS=Bos... [more]
ACDS_CLOAB6.117e-3039.77Acyl-CoA dehydrogenase, short-chain specific OS=Cl... [more]
ACDA_BACSU1.507e-2838.07Acyl-CoA dehydrogenase OS=Bacillus subtilis GN=acd... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-377 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503890 ID=CF503890; Name=CF503890; organism=Citrus sinensis; type=EST; length=694bp
CACAAAGAAAGGAGAGAAAGTAAAAAGGGAAAAAGGTGAGAGAGAAGAAT
GCAGAGGCTCTTGGGTGCACGGTCTCTCTGTGCTTCGTTCTTTACGAAGA
AGCAGAAACATTCGGCTGCTTTCTCCTCCACTTCTCTGCTCTTTGATGAC
ACTCAATTACAGTTTAAAGAAAGTGTGGGGCAATTTGCGCGAGAAAACAT
TGCTCCTCGTGCGGCAAACATTGACCAATCAAATTCGTTCCCACAGGATG
TTAATTTATGGAAACTCATGGGAAATTTCAATCTCCATGGAATAACAGCT
CCACAGGAATATGGAGGGCTTGGACTTGGTTACTTGTATCATTGCATAGC
AATGGAAGAAATTAGCCGTGCGTCGGGGTCTGTTGGTCTCTCTTACGGTG
CCCATTCTAATTTGTGCATCAATCAATTGGTGAGGCATGGAAGCCCTGCT
CAGAAAGACAAGTACTTGCCCAAGCTCATTAGTGGAGAACATGTAGGTGC
TCTTGCCATGAGTGAACCCAACGCTGGCTCTGATGTTGTTGGCATGAAAT
GCAAAGCTGATCGCGTAGATGGGGGTTATATTATAAATGGGAACAAGATG
TGGTGCACCAATGGTCCAGTTGCTCAAACGTTGGTTGTTTACGCAAAAAC
AGACATTAAAGCTGGCTCGAAAGGAATCACAGCATTTATCATAG
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