CF503893

Overview
NameCF503893
Unique NameCF503893
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF503893_ssr85 microsatellite CF503893_ssr85:85..96. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4756 contig Csv1_Contig4756:68..561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_ARATH (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana GN=At5g08180 PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 1.781e-59
Identity = 111/151 (73.51%), Postives = 129/151 (85.43%), Query Frame = 3
Query:   42 MGSDSEAERTPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 494
            MGSD+EAE++  K++KK  ++LAPIAKPLAGKKL KRT KL+++AA  KCLKRGVKEVVKSIRRG KGLCVIAGNISPIDVITH+PILCEE+ +PY+YV SKEDLA AGATKRPTCCVLV+ KP KG+L  EE  KLK DY  V +D+KEL
Sbjct:    1 MGSDTEAEKSIQKEKKKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKEL 151          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_YEAST (H/ACA ribonucleoprotein complex subunit 2 OS=Saccharomyces cerevisiae GN=NHP2 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.163e-34
Identity = 73/160 (45.62%), Postives = 112/160 (70.00%), Query Frame = 3
Query:   42 MGSDSEAERTPHKDEKK---------KIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 494
            MG D++     HK+ K+         ++ ++ P AKPLA KKL+K+ LK V++A++ K +KRGVKEVVK++R+G KGL VIAG+ISP DVI+H+P+LCE+  +PYI++ SK+DL  AGATKRPT  V ++    K + G+ ++++ K  +  VV++V+ L
Sbjct:    1 MGKDNKE----HKESKESKTVDNYEARMPAVLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIVPGSNKKKDGKNKEEEYKESFNEVVKEVQAL 156          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_SCHPO (H/ACA ribonucleoprotein complex subunit 2 OS=Schizosaccharomyces pombe GN=nhp2 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.213e-32
Identity = 63/131 (48.09%), Postives = 98/131 (74.81%), Query Frame = 3
Query:  102 SLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 494
            +L PIAKPLA KKL+K+ +K V++A++ K + RGVKEVVK++R+G KGL ++AG+ISP+DVI+H+P+LCE++++PY+Y  SKE L  A  TKRPT CV+++    K ++ + E+   K  Y  ++++V  L
Sbjct:   24 ALMPIAKPLAPKKLNKKMMKTVKKASKQKHILRGVKEVVKAVRKGEKGLVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMIVPGGKKKDMSKVEE--YKESYEEIIKEVPAL 152          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_XENTR (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus tropicalis GN=nhp2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.774e-28
Identity = 59/123 (47.97%), Postives = 81/123 (65.85%), Query Frame = 3
Query:   33 KKKMGSDSEAERTPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 401
            K K     E   TP K   + +  L PIAKPLAG+KL+K+  K V++A + K ++RGVKEV K I +G KG+ V+AG+  PI+V  H+P++CE+  IPY YV SK DL  A  +KRPTC +L+
Sbjct:    3 KAKKEESEEVPETPSKSYDELLAYLNPIAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILI 125          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_XENLA (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus laevis GN=nhp2 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.798e-27
Identity = 58/123 (47.15%), Postives = 81/123 (65.85%), Query Frame = 3
Query:   33 KKKMGSDSEAERTPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLV 401
            K K     E   TP K   + +  L P+AKPLAG+KL+K+  K V++A + K ++RGVKEV K I +G KG+ V+AG+  PI+V  H+P++CE+  IPY YV SK DL  A  +KRPTC +L+
Sbjct:    3 KVKKEECEEVPETPSKSYDELLSYLNPVAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILI 125          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_DANRE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Danio rerio GN=nhp2 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.596e-26
Identity = 65/154 (42.21%), Postives = 93/154 (60.39%), Query Frame = 3
Query:   33 KKKMGSDSEAERTPHKDEKKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYTLVVEDVKEL 494
            KK+   + E   T  K  ++ I ++ PIA PLA +KLSK+  K V++AA+ K ++RGVKEV K I +G  G+ V AG+  PIDV  H+PI+CE+  +PY YV SK DL ++  +KRPTC +++  KP          D+ K  Y   VE+V  L
Sbjct:    5 KKEKAGEEETGGT-EKSYQELIANINPIANPLASRKLSKKLYKCVKKAAKVKQIRRGVKEVQKFINKGETGIVVFAGDTLPIDVYCHLPIMCEDRSLPYAYVPSKVDLGSSAGSKRPTCVIMI--KP---------HDEYKEAYDECVEEVTSL 146          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_CAEBR (Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditis briggsae GN=CBG18231 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 4.429e-26
Identity = 55/125 (44.00%), Postives = 87/125 (69.60%), Query Frame = 3
Query:   48 SDSEAERTPHKDEKKKIVSLA-PIAKPLAGKKLSKRTLKLVRRAAE-HKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 416
            ++  A  T  KDE + +  L  PIA+PLA +KL+K+  KL+++AA   K L+ G+K+V K +R+  KG+C++AGN+SPIDV +H+P +CEE +IPY+Y+ S+E L  A   +RP+  +L+  KP+
Sbjct:   19 AEDVAALTTEKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKAAAGEKTLREGIKDVQKELRKNEKGICILAGNVSPIDVYSHIPAICEEKEIPYVYIPSREQLGLAVGHRRPS--ILIFVKPS 141          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_MOUSE (H/ACA ribonucleoprotein complex subunit 2 OS=Mus musculus GN=Nhp2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 5.784e-26
Identity = 60/141 (42.55%), Postives = 94/141 (66.67%), Query Frame = 3
Query:   36 KKMGSDSEAERTPHKDE---KKKIVSLAPIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDK 449
            K    +SEA+     +E   K+ +V+L PIA+PLA ++L+++  K +++A + K ++RGVKEV K + +G KG+ V+AG+  PI+V  H+P+LCE+ ++PY+Y+ SK DL  A  +KRPTC ++V  KP   E  QE  DK
Sbjct:    5 KAAPEESEAQAEGCSEERTYKELLVNLNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVLCEDQNLPYVYIPSKTDLGAATGSKRPTCVIMV--KP--HEEYQETYDK 141          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_CAEEL (Putative H/ACA ribonucleoprotein complex subunit 2-like protein OS=Caenorhabditis elegans GN=Y48A6B.3 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.289e-25
Identity = 55/118 (46.61%), Postives = 84/118 (71.19%), Query Frame = 3
Query:   69 TPHKDEKKKIVSLA-PIAKPLAGKKLSKRTLKLVRRA-AEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPT 416
            T  KDE + +  L  PIA+PLA +KL+K+  KL+++A A  K L+ G+K+V K +RR  KG+C++AGN+SPIDV +H+P +CEE +IPY+Y+ S+E L  A   +RP+  +L+  KP+
Sbjct:   26 TTEKDEYQALCELVNPIAQPLANRKLAKKVYKLIKKASAGDKTLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRRPS--ILIFVKPS 141          
BLAST of CF503893 vs. ExPASy Swiss-Prot
Match: NHP2_BRABE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.683e-25
Identity = 54/119 (45.38%), Postives = 84/119 (70.59%), Query Frame = 3
Query:  111 PIAKPLAGKKLSKRTLKLVRRAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQEEQDKLKADYT 467
            PIA PLA +KL+KR  K V++A++ K +++G+++V K I++G +G+ +IAG+ +PI+V  H+P++CE++ IPY YV +K+DL  A  +KRPTCCVL+  KP   E  Q   D+   D T
Sbjct:   39 PIASPLAARKLTKRLYKTVKKASKEKNIRKGIRDVQKFIKKGERGIVLIAGDTTPIEVYCHLPVVCEDAKIPYCYVPAKQDLGEAAGSKRPTCCVLL--KP--NESYQSSYDECLTDVT 153          
The following BLAST results are available for this feature:
BLAST of CF503893 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
NHP2_ARATH1.781e-5973.51H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_YEAST1.163e-3445.63H/ACA ribonucleoprotein complex subunit 2 OS=Sacch... [more]
NHP2_SCHPO9.213e-3248.09H/ACA ribonucleoprotein complex subunit 2 OS=Schiz... [more]
NHP2_XENTR2.774e-2847.97H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_XENLA1.798e-2747.15H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_DANRE2.596e-2642.21H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_CAEBR4.429e-2644.00Putative H/ACA ribonucleoprotein complex subunit 2... [more]
NHP2_MOUSE5.784e-2642.55H/ACA ribonucleoprotein complex subunit 2 OS=Mus m... [more]
NHP2_CAEEL1.289e-2546.61Putative H/ACA ribonucleoprotein complex subunit 2... [more]
NHP2_BRABE1.683e-2545.38H/ACA ribonucleoprotein complex subunit 2-like pro... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-380 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503893 ID=CF503893; Name=CF503893; organism=Citrus sinensis; type=EST; length=494bp
GTCTCTGTTTCGTGCAATTCATTGAGAACTGAAAAAAGAAAATGGGAAGC
GACAGCGAAGCAGAGAGAACCCCACATAAAGATGAGAAGAAGAAGATTGT
TAGTCTTGCTCCCATTGCTAAACCTCTAGCTGGCAAGAAGCTCTCCAAAA
GAACCCTCAAGCTTGTCCGTCGAGCTGCTGAACACAAATGCTTGAAGAGA
GGAGTGAAGGAAGTGGTCAAAAGTATCCGCCGTGGTCATAAAGGATTATG
TGTTATAGCTGGGAACATTAGTCCAATTGATGTCATCACTCACGTTCCTA
TCTTATGTGAAGAGTCTGATATTCCCTACATCTATGTTGCTTCAAAAGAG
GATCTTGCAAATGCAGGTGCCACAAAGAGGCCAACATGCTGTGTTTTGGT
GCTAACTAAGCCAACTAAGGGAGAACTAGGACAAGAGGAACAAGATAAGT
TGAAAGCTGATTATACCCTCGTTGTAGAGGATGTGAAGGAACTG
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