CF503895

Overview
NameCF503895
Unique NameCF503895
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length456
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF503895_ssr144 microsatellite CF503895_ssr144:144..175. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig505 contig Csv1_Contig505:1..458. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503895 vs. ExPASy Swiss-Prot
Match: RER1C_ARATH (Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.549e-13
Identity = 32/46 (69.57%), Postives = 38/46 (82.61%), Query Frame = 3
Query:  318 SRRYQHLLDKSVPHVLHRWVVCLAVVSIYAVRVYLVQGVYIITYGL 455
            S+R QHLLDK+VPHVL+RW+ CL VV IY VRVY V+G YIITY +
Sbjct:   45 SQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAI 90          
The following BLAST results are available for this feature:
BLAST of CF503895 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RER1C_ARATH4.549e-1369.57Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-382 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_A06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503895 ID=CF503895; Name=CF503895; organism=Citrus sinensis; type=EST; length=456bp
GAAAGGCGTCCTCTCTTCCACTGCCGGAGTCAAGCGATCGAAGCATCCAA
TTATAGTTTAACAAAAACTGAACTAAAAACATCGACACACACAATACAAA
CGCAATTTTTATTTTTTATTTTAATTTCTGATTAAAAAAAAATTATATAT
ATATATATATATATATATATATATATCTCGCCCAAAATATCTACAACCAG
TAGTGGGCTCCAATGGAAACCGTACCGACCGCAACCGCCGCAACCGCAGA
AGATTTCTCCTCCTCATCATCGTCAACGTCTCCGACGGCAGCCATCTCGC
GGGGGAAATACAATGTTTCGCGACGGTACCAGCACTTACTGGACAAGTCG
GTCCCACACGTTCTGCACCGTTGGGTTGTCTGCTTGGCCGTGGTTTCAAT
CTACGCCGTACGCGTGTACCTTGTCCAAGGGGTTTACATCATCACGTACG
GGCTAG
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