CF503900

Overview
NameCF503900
Unique NameCF503900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503900 vs. ExPASy Swiss-Prot
Match: ATK3_ARATH (Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.649e-52
Identity = 111/203 (54.68%), Postives = 147/203 (72.41%), Query Frame = 2
Query:  110 MVGT-ANNARIRQAFSVVNGIQDLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQRNL-QKKNQISWRHLILLQERKRQDLIWRDHMPLSQKTLEKHKRSSKC*SKDSVNNDMYKLLQE 712
            MVG  ANN RIR AF V NG +DL  +S PAS  GSE G +EFTREDVE LL+E+++YK+KFNYKERCENMMDYIKRLRLCI+WFQELE DYAFE E+L+NALEL+E+ C +ME++L+NKEEELN+II ELRK+F S+Q  L +++ +    +  L +E++ +  + +    L+++  +          +    NDMYKLLQE
Sbjct:    1 MVGAMANNGRIRSAFPVTNGSKDLTPNSAPASTTGSEYGPVEFTREDVETLLNERIKYKSKFNYKERCENMMDYIKRLRLCIRWFQELELDYAFEQEKLKNALELNEKHCVDMEVSLKNKEEELNMIIEELRKNFESVQVQLAREQTEKLAANDSLGKEKEARLSVEKAQAGLTEELGKAQGDLQTANQRIQSVNDMYKLLQE 203          
BLAST of CF503900 vs. ExPASy Swiss-Prot
Match: ATK2_ARATH (Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.540e-43
Identity = 98/203 (48.28%), Postives = 136/203 (67.00%), Query Frame = 2
Query:  110 MVGT-ANNARIRQAFSVVNGIQDLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQRNLQK-KNQISWRHLILLQERKRQDLIWRDHMPLSQKTLEKHKRSSKC*SKDSVNNDMYKLLQE 712
            MVG   NN RIR +F V +      L+SN  S  G   G +EFTREDVE LL E+++YK+K+NYKERCEN MDY+KRLRLCI+WFQELE DYAFE E+L+NA+E++E+ CA++E+ L+ KEEELN++I ELRK+FAS+Q  L K + +    +  L +ER+ +  +      ++++  +          +    NDMYKLLQE
Sbjct:    1 MVGEMTNNGRIRPSFPVKD------LTSNEGSEYG---GPVEFTREDVETLLHERIKYKSKYNYKERCENTMDYVKRLRLCIRWFQELELDYAFEQEKLKNAMEMNEKHCADLEVNLKVKEEELNMVIDELRKNFASVQVQLAKEQTEKLAANESLGKEREARIAVESLQAAITEELAKTQGELQTANQRIQAVNDMYKLLQE 194          
BLAST of CF503900 vs. ExPASy Swiss-Prot
Match: ATK1_ARATH (Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 76/208 (36.54%), Postives = 114/208 (54.81%), Query Frame = 2
Query:   95 FGAEKMVGTANNARIRQAFSVVNGIQDLGLSSNPASNAGSECGTIEFTREDVEALLSEKMRYKNKFNYKERCENMMDYIKRLRLCIKWFQELEGDYAFEHERLRNALELSEQKCAEMELALRNKEEELNLIIVELRKSFASLQRNLQKKNQISWRHLILLQERKRQDLIWRDHMPLSQKTLEKHKRSSKC*SKDSVNN--DMYKLLQE 712
            F   + V T      RQAFS VN  QD+ ++S+  S    ECG ++FT++++ ALLSE+ +   KF+ K + E M D IKRL++C+KWFQ+ +  +  E E L+ +LE SEQK    EL  R KEEEL   I +L ++  SL   L K+ + S +  I    R+++  +  + +  S        +  K  +K  V +  DMYK LQE
Sbjct:   25 FDKRRKVETQGGTGRRQAFSAVNK-QDVTMNSDVGSI--EECGKVDFTKDEILALLSERAK-AGKFDTKAKIEQMTDIIKRLKVCVKWFQQADETHVQEKENLKVSLESSEQKYNHKELEARTKEEELQATISKLEENVVSLHEKLAKE-ESSTQDAIECHRREKEARVAAEKVQASLGEELDKVKEEKMAAKQKVTSLEDMYKRLQE 227          
The following BLAST results are available for this feature:
BLAST of CF503900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ATK3_ARATH2.649e-5254.68Kinesin-3 OS=Arabidopsis thaliana GN=ATK3 PE=2 SV=... [more]
ATK2_ARATH6.540e-4348.28Kinesin-2 OS=Arabidopsis thaliana GN=ATK2 PE=2 SV=... [more]
ATK1_ARATH1.789e-2436.54Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-387 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_A11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503900 ID=CF503900; Name=CF503900; organism=Citrus sinensis; type=EST; length=712bp
CCAGTTCTTAGCAACAACATAACAAAAGCAAGCCCTTCCTCCAATAAGAA
GAAGCTCGGTGTTGATGAGGTGACCTTGTGACAAAGAGCAAAAGTTTGGA
GCCGAAAAAATGGTTGGCACAGCAAATAATGCAAGGATCCGGCAAGCTTT
TTCTGTGGTAAATGGGATCCAGGATCTTGGCTTGAGTAGCAATCCGGCAA
GCAATGCGGGTTCTGAATGCGGTACCATTGAATTTACAAGAGAGGATGTT
GAGGCTTTATTGAGTGAGAAAATGAGATACAAGAACAAGTTCAATTACAA
GGAGAGATGCGAGAATATGATGGACTACATAAAGAGGCTTAGACTTTGCA
TTAAGTGGTTTCAAGAGCTAGAGGGAGACTATGCATTTGAGCATGAGAGA
CTGAGGAATGCACTGGAATTGAGTGAACAAAAATGTGCTGAGATGGAGCT
GGCTTTGAGAAACAAGGAAGAGGAACTCAATTTGATAATTGTGGAGTTGA
GAAAGAGTTTTGCTTCTTTACAGAGAAACTTGCAAAAGAAGAATCAGATA
AGTTGGCGGCACTTGATTCTCTTGCAAGAGAGAAAGAGACAAGACTTAAT
ATGGAGAGATCACATGCCTCTCTCTCAGAAGACCTTGGAAAAGCACAAGA
GGAGCTCCAAGTGCTAATCAAAGGATAGCGTCAATAATGATATGTACAAG
CTATTACAGGAG
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