CF503901 | Citrus Genome Database

Overview


Name	CF503901
Unique Name	CF503901
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	609

Libraries


Library Name	Type
Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9569	contig	Csv1_Contig9569:6..613.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of CF503901 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.865e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:   55 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 148.288 bits (373), Expect = 2.911e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

Query:  283 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 507
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75

BLAST of CF503901 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.865e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:   55 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 148.288 bits (373), Expect = 2.911e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

Query:  283 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 507
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75

BLAST of CF503901 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.865e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:   55 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 148.288 bits (373), Expect = 2.911e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

Query:  283 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 507
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75

BLAST of CF503901 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.865e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:   55 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 148.288 bits (373), Expect = 2.911e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

Query:  283 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 507
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75

BLAST of CF503901 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.865e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:   55 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 148.288 bits (373), Expect = 2.911e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

Query:  283 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 507
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75

BLAST of CF503901 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.865e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:   55 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 148.288 bits (373), Expect = 2.911e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

Query:  283 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 507
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75

BLAST of CF503901 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.865e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:   55 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 148.288 bits (373), Expect = 2.911e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

Query:  283 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 507
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75

BLAST of CF503901 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.865e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:   55 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 148.288 bits (373), Expect = 2.911e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

Query:  283 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 507
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75

BLAST of CF503901 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.865e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:   55 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 148.288 bits (373), Expect = 2.911e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

Query:  283 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 507
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75

BLAST of CF503901 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.865e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1

Query:   55 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 282
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 148.288 bits (373), Expect = 2.911e-35
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1

Query:  283 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 507
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 75

The following BLAST results are available for this feature:

BLAST of CF503901 vs. ExPASy Swiss-Prot

BLAST of CF503901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98


Match Name	E-value	Identity	Description
UBIQ_WHEAT	5.865e-36	100.00	Ubiquitin OS=Triticum aestivum PE=3 SV=1	[more]
UBIQ_SOYBN	5.865e-36	100.00	Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1	[more]
UBIQ_SOLTU	5.865e-36	100.00	Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1	[more]
UBIQ_SOLLC	5.865e-36	100.00	Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=...	[more]
UBIQ_PETCR	5.865e-36	100.00	Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3...	[more]
UBIQ_PEA	5.865e-36	100.00	Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1	[more]
UBIQ_ORYSJ	5.865e-36	100.00	Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ...	[more]
UBIQ_NICSY	5.865e-36	100.00	Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE...	[more]
UBIQ_MAIZE	5.865e-36	100.00	Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1	[more]
UBIQ_LUPPO	5.865e-36	100.00	Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_119000-388 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_A12 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF503901 ID=CF503901; Name=CF503901; organism=Citrus sinensis; type=EST; length=609bp
GATTATCTTCACCTTTAATTCGATAAAAGGCCTCCTTCTGTTCTCTCTGT
CAAGATGCAAATCTTTGTGAAAACTCTCACCGGCAAGACAATAACCCTTG
AGGTTGAAAGCTCCGACACCATTGATAATGTAAAAGCCAAGATCCAGGAC
AAGGAAGGGATCCCACCAGATCAGCAGAGGCTTATCTTTGCTGGTAAACA
GCTCGAGGATGGTCGCACACTCGCTGACTATAATATCCAGAAGGAATCAA
CCCTCCACTTGGTCCTTCGACTTAGGGGTGGTATGCAGATCTTTGTAAAG
ACCCTCACTGGCAAGACGATTACTCTTGAGGTGGAAAGCTCCGACACCAT
TGACAATGTGAAAGCCAAGATTCAAGACAAGGAAGGGATCCCACCAGACC
AACAGAGGCTTATCTTTGCTGGTAAACAGCTTGAGGATGGTCGCACACTT
GCTGATTATAACATCCAGAAGGAGTCAACCCTCCACTTGGTCCTCCGTCT
CCGTGGATGGTATGCAGATCTTTGTAAAGACCCTCACTGGAAAGACTATC
ACCCTTGAGGTGGAAAGCTCCGACACCATTGACAATGTCAAGCCAAATTC
AGGATAAGG