CF503903
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF503903 vs. ExPASy Swiss-Prot
Match: VPS35_DICDI (Vacuolar sorting protein 35 OS=Dictyostelium discoideum GN=vps35 PE=3 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 6.563e-35 Identity = 71/156 (45.51%), Postives = 111/156 (71.15%), Query Frame = 3 Query: 75 VGKNLHVLSQIEGVDLDMYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLG 542 VGKNL L+Q++GVD Y E VLP+V+EQ++NCKD+IAQ YLM+ +IQVFPDE+HL TL+I+L QLQ VD+KT+++ L++RL+N+A + +++P+ ++ F N + ++I+A+ +M + + L+ SLL TL +P D A++VLG Sbjct: 223 VGKNLSRLAQLDGVDQKTYSEVVLPKVVEQIINCKDKIAQQYLMEILIQVFPDEFHLATLDIILQTCAQLQSGVDVKTIIASLIDRLANFATRNADLVPD--NIKIFDIFFNNVKEIIQARPNMELQDILGLHVSLLNLTLKCYPTNKDNANEVLG 376
BLAST of CF503903 vs. ExPASy Swiss-Prot
Match: VPS35_MOUSE (Vacuolar protein sorting-associated protein 35 OS=Mus musculus GN=Vps35 PE=1 SV=1) HSP 1 Score: 132.109 bits (331), Expect = 1.673e-30 Identity = 69/156 (44.23%), Postives = 104/156 (66.67%), Query Frame = 3 Query: 75 VGKNLHVLSQIEGVDLDMYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYA-ASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVL 539 VG NL LSQ+EGV+++ YK+ VL +LEQVVNC+D +AQ YLM+CIIQVFPDE+HLQTL L A +L +V++K ++ L++RL+ +A +P +++ F + + VI+++ DMP V+L SL+ + +PDR+DY D+VL Sbjct: 220 VGTNLVRLSQLEGVNVERYKQIVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIALIDRLALFAHREDGPGIP--AEIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCYPDRVDYVDKVL 373
BLAST of CF503903 vs. ExPASy Swiss-Prot
Match: VPS35_HUMAN (Vacuolar protein sorting-associated protein 35 OS=Homo sapiens GN=VPS35 PE=1 SV=2) HSP 1 Score: 131.339 bits (329), Expect = 2.853e-30 Identity = 69/156 (44.23%), Postives = 103/156 (66.03%), Query Frame = 3 Query: 75 VGKNLHVLSQIEGVDLDMYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYA-ASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVL 539 VG NL LSQ+EGV+++ YK+ VL +LEQVVNC+D +AQ YLM+CIIQVFPDE+HLQTL L A +L +V++K ++ L++RL+ +A +P ++ F + + VI+++ DMP V+L SL+ + +PDR+DY D+VL Sbjct: 220 VGTNLVRLSQLEGVNVERYKQIVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIALIDRLALFAHREDGPGIP--ADIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCYPDRVDYVDKVL 373
BLAST of CF503903 vs. ExPASy Swiss-Prot
Match: VPS35_BOVIN (Vacuolar protein sorting-associated protein 35 OS=Bos taurus GN=VPS35 PE=2 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 2.853e-30 Identity = 69/156 (44.23%), Postives = 103/156 (66.03%), Query Frame = 3 Query: 75 VGKNLHVLSQIEGVDLDMYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYA-ASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVL 539 VG NL LSQ+EGV+++ YK+ VL +LEQVVNC+D +AQ YLM+CIIQVFPDE+HLQTL L A +L +V++K ++ L++RL+ +A +P ++ F + + VI+++ DMP V+L SL+ + +PDR+DY D+VL Sbjct: 220 VGTNLVRLSQLEGVNVERYKQIVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIALIDRLALFAHREDGPGIP--TDIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCYPDRVDYVDKVL 373
BLAST of CF503903 vs. ExPASy Swiss-Prot
Match: VPS35_YEAST (Vacuolar protein sorting-associated protein 35 OS=Saccharomyces cerevisiae GN=VPS35 PE=1 SV=2) HSP 1 Score: 94.7449 bits (234), Expect = 2.960e-19 Identity = 55/175 (31.43%), Postives = 88/175 (50.29%), Query Frame = 3 Query: 15 QGPAXXXXXXXXXXXXXXXXVGKNLHVLSQIEGVDLDMYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPE------FLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLD 521 QGP VG L LSQI + MYK+ +LP +LEQV+ C+D ++Q YL+D I QVF DE+HL+TL+ LL L P V I ++ L++RL++Y E P +L ++ F + + + + D+ + + L S++ +L +P+ D Sbjct: 181 QGPLRERETRTRERKELQILVGSQLVRLSQIIDDNFQMYKQDILPTILEQVIQCRDLVSQEYLLDVICQVFADEFHLKTLDTLLQTTLHLNPDVSINKIVLTLVDRLNDYVTRQLEDDPNATSTNAYLDMDVFGTFWDYLTVLNHERPDLSLQQFIPLVESVIVLSLKWYPNNFD 355
BLAST of CF503903 vs. ExPASy Swiss-Prot
Match: VPS35_SCHPO (Vacuolar protein sorting-associated protein 35 OS=Schizosaccharomyces pombe GN=vps35 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 1.243e-17 Identity = 57/192 (29.69%), Postives = 97/192 (50.52%), Query Frame = 3 Query: 75 VGKNLHVLSQIEGVDLDMYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTE--------------------------------------VLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQV 536 VG NL LSQ+ +D+D Y++ VLP ++EQ++ C+D +AQ YL++ I Q F D HLQTL+ G +L PSV++ ++ ++ RL++Y E + PE+ E L + + +VI++++ +P+ V++ SS+L F L +P + YAD+V Sbjct: 170 VGLNLVRLSQLN-LDIDTYRDHVLPAIIEQIIECRDSLAQEYLVEVICQAFSDNMHLQTLDTYFGTVIKLSPSVNVTQLVVAMLNRLTDYVQREYESDSSNEDESETVTEKLGDIKINEEVQQKDEQECPGDKVIPPEYAIQEV---LWSHVVEVIQSRSGLPLDCIVSILSSILNFFLRCYPYKPQYADRV 357 The following BLAST results are available for this feature:
BLAST of CF503903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF503903 ID=CF503903; Name=CF503903; organism=Citrus sinensis; type=EST; length=546bpback to top |