CF503903

Overview
NameCF503903
Unique NameCF503903
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig506 contig Csv1_Contig506:1..546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503903 vs. ExPASy Swiss-Prot
Match: VPS35_DICDI (Vacuolar sorting protein 35 OS=Dictyostelium discoideum GN=vps35 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.563e-35
Identity = 71/156 (45.51%), Postives = 111/156 (71.15%), Query Frame = 3
Query:   75 VGKNLHVLSQIEGVDLDMYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLG 542
            VGKNL  L+Q++GVD   Y E VLP+V+EQ++NCKD+IAQ YLM+ +IQVFPDE+HL TL+I+L    QLQ  VD+KT+++ L++RL+N+A  + +++P+   ++ F    N + ++I+A+ +M +   + L+ SLL  TL  +P   D A++VLG
Sbjct:  223 VGKNLSRLAQLDGVDQKTYSEVVLPKVVEQIINCKDKIAQQYLMEILIQVFPDEFHLATLDIILQTCAQLQSGVDVKTIIASLIDRLANFATRNADLVPD--NIKIFDIFFNNVKEIIQARPNMELQDILGLHVSLLNLTLKCYPTNKDNANEVLG 376          
BLAST of CF503903 vs. ExPASy Swiss-Prot
Match: VPS35_MOUSE (Vacuolar protein sorting-associated protein 35 OS=Mus musculus GN=Vps35 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.673e-30
Identity = 69/156 (44.23%), Postives = 104/156 (66.67%), Query Frame = 3
Query:   75 VGKNLHVLSQIEGVDLDMYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYA-ASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVL 539
            VG NL  LSQ+EGV+++ YK+ VL  +LEQVVNC+D +AQ YLM+CIIQVFPDE+HLQTL   L A  +L  +V++K ++  L++RL+ +A       +P   +++ F   +  +  VI+++ DMP    V+L  SL+   +  +PDR+DY D+VL
Sbjct:  220 VGTNLVRLSQLEGVNVERYKQIVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIALIDRLALFAHREDGPGIP--AEIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCYPDRVDYVDKVL 373          
BLAST of CF503903 vs. ExPASy Swiss-Prot
Match: VPS35_HUMAN (Vacuolar protein sorting-associated protein 35 OS=Homo sapiens GN=VPS35 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 2.853e-30
Identity = 69/156 (44.23%), Postives = 103/156 (66.03%), Query Frame = 3
Query:   75 VGKNLHVLSQIEGVDLDMYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYA-ASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVL 539
            VG NL  LSQ+EGV+++ YK+ VL  +LEQVVNC+D +AQ YLM+CIIQVFPDE+HLQTL   L A  +L  +V++K ++  L++RL+ +A       +P    ++ F   +  +  VI+++ DMP    V+L  SL+   +  +PDR+DY D+VL
Sbjct:  220 VGTNLVRLSQLEGVNVERYKQIVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIALIDRLALFAHREDGPGIP--ADIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCYPDRVDYVDKVL 373          
BLAST of CF503903 vs. ExPASy Swiss-Prot
Match: VPS35_BOVIN (Vacuolar protein sorting-associated protein 35 OS=Bos taurus GN=VPS35 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.853e-30
Identity = 69/156 (44.23%), Postives = 103/156 (66.03%), Query Frame = 3
Query:   75 VGKNLHVLSQIEGVDLDMYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYA-ASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVL 539
            VG NL  LSQ+EGV+++ YK+ VL  +LEQVVNC+D +AQ YLM+CIIQVFPDE+HLQTL   L A  +L  +V++K ++  L++RL+ +A       +P    ++ F   +  +  VI+++ DMP    V+L  SL+   +  +PDR+DY D+VL
Sbjct:  220 VGTNLVRLSQLEGVNVERYKQIVLTGILEQVVNCRDALAQEYLMECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIALIDRLALFAHREDGPGIP--TDIKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCYPDRVDYVDKVL 373          
BLAST of CF503903 vs. ExPASy Swiss-Prot
Match: VPS35_YEAST (Vacuolar protein sorting-associated protein 35 OS=Saccharomyces cerevisiae GN=VPS35 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.960e-19
Identity = 55/175 (31.43%), Postives = 88/175 (50.29%), Query Frame = 3
Query:   15 QGPAXXXXXXXXXXXXXXXXVGKNLHVLSQIEGVDLDMYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPE------FLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLD 521
            QGP                 VG  L  LSQI   +  MYK+ +LP +LEQV+ C+D ++Q YL+D I QVF DE+HL+TL+ LL     L P V I  ++  L++RL++Y     E  P       +L ++ F    + +  +   + D+ +   + L  S++  +L  +P+  D
Sbjct:  181 QGPLRERETRTRERKELQILVGSQLVRLSQIIDDNFQMYKQDILPTILEQVIQCRDLVSQEYLLDVICQVFADEFHLKTLDTLLQTTLHLNPDVSINKIVLTLVDRLNDYVTRQLEDDPNATSTNAYLDMDVFGTFWDYLTVLNHERPDLSLQQFIPLVESVIVLSLKWYPNNFD 355          
BLAST of CF503903 vs. ExPASy Swiss-Prot
Match: VPS35_SCHPO (Vacuolar protein sorting-associated protein 35 OS=Schizosaccharomyces pombe GN=vps35 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.243e-17
Identity = 57/192 (29.69%), Postives = 97/192 (50.52%), Query Frame = 3
Query:   75 VGKNLHVLSQIEGVDLDMYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTE--------------------------------------VLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQV 536
            VG NL  LSQ+  +D+D Y++ VLP ++EQ++ C+D +AQ YL++ I Q F D  HLQTL+   G   +L PSV++  ++  ++ RL++Y     E                                      + PE+   E    L + + +VI++++ +P+   V++ SS+L F L  +P +  YAD+V
Sbjct:  170 VGLNLVRLSQLN-LDIDTYRDHVLPAIIEQIIECRDSLAQEYLVEVICQAFSDNMHLQTLDTYFGTVIKLSPSVNVTQLVVAMLNRLTDYVQREYESDSSNEDESETVTEKLGDIKINEEVQQKDEQECPGDKVIPPEYAIQEV---LWSHVVEVIQSRSGLPLDCIVSILSSILNFFLRCYPYKPQYADRV 357          
The following BLAST results are available for this feature:
BLAST of CF503903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
VPS35_DICDI6.563e-3545.51Vacuolar sorting protein 35 OS=Dictyostelium disco... [more]
VPS35_MOUSE1.673e-3044.23Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_HUMAN2.853e-3044.23Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_BOVIN2.853e-3044.23Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_YEAST2.960e-1931.43Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_SCHPO1.243e-1729.69Vacuolar protein sorting-associated protein 35 OS=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-390 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503903 ID=CF503903; Name=CF503903; organism=Citrus sinensis; type=EST; length=546bp
GGCTTTCTGGACTGCAGGGACCTGCCCGGGAGAAGGACAAACGGGAGAAA
GAAAGGAGCGAGCTACGTGATCTTGTTGGGAAGAACCTGCATGTCCTCAG
TCAGATAGAGGGTGTCGACCTTGATATGTACAAAGAAACTGTGCTTCCCA
GAGTTCTCGAGCAGGTTGTCAATTGTAAAGATGAGATTGCACAGTGCTAC
TTGATGGACTGCATCATCCAAGTCTTTCCTGATGAGTACCACTTGCAAAC
TCTTGAAATATTGTTGGGGGCTTTCCCACAGCTTCAACCATCTGTTGACA
TCAAGACAGTCCTATCTCGTTTGATGGAAAGACTTTCAAACTATGCTGCT
TCAAGCACAGAAGTTTTACCTGAGTTCTTGCAAGTAGAAGCTTTTTCCAA
GTTGAACAATGCCATTGGGAAGGTGATAGAAGCTCAGGCTGACATGCCTA
TCCTTGGAGCTGTAACTTTATATTCATCTCTTCTTACGTTTACTCTCCAT
GTACACCCTGATCGGCTTGATTATGCAGATCAAGTGCTGGGAGCTT
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