CF503908

Overview
NameCF503908
Unique NameCF503908
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: GAPN_NICPL (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Nicotiana plumbaginifolia GN=GAPN PE=2 SV=1)

HSP 1 Score: 359.377 bits (921), Expect = 8.729e-99
Identity = 176/195 (90.26%), Postives = 186/195 (95.38%), Query Frame = 2
Query:   44 MAGNGIFAEILDGDVFKYYADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPT 628
            MAGNG+F +I++GDVFKYY++GEWKKS SGKSV I+NPTTR+T YKVQAC+QEEVNKVME AK AQK WAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEV+RSGDLVSY AEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGV LAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPT
Sbjct:    1 MAGNGVFVDIIEGDVFKYYSEGEWKKSASGKSVAIINPTTRKTQYKVQACTQEEVNKVMEVAKTAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYTAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPT 195          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: GAPN_PEA (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Pisum sativum GN=GAPN PE=1 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 3.317e-98
Identity = 175/195 (89.74%), Postives = 185/195 (94.87%), Query Frame = 2
Query:   44 MAGNGIFAEILDGDVFKYYADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPT 628
            MA  G+ AEI+DGDV+KYYADGEWKKS SGKSV I+NPTTR+  YKVQACSQEEVNKVM++AK+AQK WAKTPLWKRAELLHKAAAILKEHKA IAECLVKEIAKPAKDAVTEV+RSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGV LAIPPFNYPVNLAVSKIAPALIAGNS+VLKPPT
Sbjct:    1 MAATGVLAEIIDGDVYKYYADGEWKKSTSGKSVAIINPTTRKPQYKVQACSQEEVNKVMDSAKSAQKSWAKTPLWKRAELLHKAAAILKEHKAAIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPT 195          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: GAPN_APIGR (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Apium graveolens PE=1 SV=1)

HSP 1 Score: 349.362 bits (895), Expect = 9.033e-96
Identity = 168/195 (86.15%), Postives = 184/195 (94.36%), Query Frame = 2
Query:   44 MAGNGIFAEILDGDVFKYYADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPT 628
            MAG+G++A+I++GDVFKYY+DGEWKKS+SGKSV I+NPTTR T +KVQAC+QEEVNK ME AK  QK WAKTPLWKRAELLHKAAAILKEHKA IA+CLVKEIAKPAKD+VTEV+RSGDLVSYCAEEGVR+LGEGKFLVSDSFPGNERTKYCLTSKIPLGV LAIPPFNYPVNLAVSKI PALIAGN+LVLKPPT
Sbjct:    1 MAGSGVYADIIEGDVFKYYSDGEWKKSSSGKSVAIINPTTRMTQFKVQACTQEEVNKAMETAKKVQKQWAKTPLWKRAELLHKAAAILKEHKAAIADCLVKEIAKPAKDSVTEVVRSGDLVSYCAEEGVRLLGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIGPALIAGNALVLKPPT 195          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: GAPN_ARATH (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Arabidopsis thaliana GN=ALDH11A3 PE=1 SV=2)

HSP 1 Score: 347.051 bits (889), Expect = 4.483e-95
Identity = 169/195 (86.67%), Postives = 185/195 (94.87%), Query Frame = 2
Query:   44 MAGNGIFAEILDGDVFKYYADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPT 628
            MAG G+FAEILDG+V+KYYADGEWK S+SGKSV I+NP TR+T YKVQAC+QEEVN VME AK+AQK WAKTPLWKRAELLHKAAAILK++KAP+AE LVKEIAKPAKD+VTEV+RSGDL+SYCAEEGVRILGEGKFL+SDSFPGN+RTKYCLTSKIPLGV LAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPT
Sbjct:    1 MAGTGLFAEILDGEVYKYYADGEWKTSSSGKSVAIMNPATRKTQYKVQACTQEEVNAVMELAKSAQKSWAKTPLWKRAELLHKAAAILKDNKAPMAESLVKEIAKPAKDSVTEVVRSGDLISYCAEEGVRILGEGKFLLSDSFPGNDRTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPT 195          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: GAPN_WHEAT (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Triticum aestivum GN=GAPN PE=1 SV=2)

HSP 1 Score: 339.732 bits (870), Expect = 7.157e-93
Identity = 165/195 (84.62%), Postives = 181/195 (92.82%), Query Frame = 2
Query:   44 MAGNGIFAEILDGDVFKYYADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPT 628
            MAG G+FA++LDG+V+KYYADGEW+ S SGK+V IVNPTTR+T Y+VQAC+QEEVNKVM+AAK AQK WA+TPLWKRAELLHKAAAILKEHK PIAE LVKEIAKPAKDAV+EV+RSGDLVSY AEEGVRILGEGK LVSDSFPGNER KYCL+SK+PLGV LAIPPFNYPVNLAVSKI PALIAGNSLVLKPPT
Sbjct:    1 MAGTGVFADVLDGEVYKYYADGEWRASASGKTVAIVNPTTRQTQYRVQACTQEEVNKVMDAAKVAQKSWARTPLWKRAELLHKAAAILKEHKTPIAESLVKEIAKPAKDAVSEVVRSGDLVSYTAEEGVRILGEGKLLVSDSFPGNERNKYCLSSKVPLGVVLAIPPFNYPVNLAVSKIGPALIAGNSLVLKPPT 195          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: GAPN_MAIZE (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Zea mays GN=GPN1 PE=2 SV=1)

HSP 1 Score: 336.265 bits (861), Expect = 7.913e-92
Identity = 162/195 (83.08%), Postives = 180/195 (92.31%), Query Frame = 2
Query:   44 MAGNGIFAEILDGDVFKYYADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPT 628
            +AG G+FAEILDG+V++YYADGEW+ S SGKSV IVNPTTR+T Y+VQAC+QEEVNK M+AAK AQK WA+TPLWKRA++LHKAAAILKEHKAPIAECLVKEIAKPAKDAV+EV+RSGDLVSY AEEGVRILGEGK +VSDSFPGNER KYCL+SKIPLGV LAIPPFNYP NLA SKI PALIAGN+LVLKPPT
Sbjct:    3 LAGTGVFAEILDGEVYRYYADGEWRTSASGKSVAIVNPTTRKTQYRVQACTQEEVNKAMDAAKVAQKAWARTPLWKRADVLHKAAAILKEHKAPIAECLVKEIAKPAKDAVSEVVRSGDLVSYTAEEGVRILGEGKLVVSDSFPGNERNKYCLSSKIPLGVVLAIPPFNYPANLAGSKIGPALIAGNALVLKPPT 197          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: GAPN_STREI (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus equinus GN=gapN PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.500e-37
Identity = 90/180 (50.00%), Postives = 112/180 (62.22%), Query Frame = 2
Query:   89 FKYYADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPT 628
            +K Y +GEWK S   + + I  P T      V A SQEEV+ V  +AKAAQK W      +RAE LHKAA IL      I   L KEIAK  K AV EVIR+ ++++Y AEEGVR+  EG+ L   SF    + K  +  + P+G+ LAI PFNYP+NLA SKIAPALI+GN + LKPPT
Sbjct:    5 YKNYVNGEWKLSK--EEIKIYAPATGEELGSVPAMSQEEVDYVYASAKAAQKAWRALSYVERAEYLHKAADILMRDAEKIGAVLSKEIAKGYKSAVGEVIRTAEIINYAAEEGVRL--EGEVLEGGSFDPASKKKIAIVRREPVGLVLAISPFNYPINLAGSKIAPALISGNVVALKPPT 180          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: GAPN_STRMU (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus mutans GN=gapN PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.517e-34
Identity = 83/180 (46.11%), Postives = 108/180 (60.00%), Query Frame = 2
Query:   89 FKYYADGEWKKSNSGKSVPIVNPTTRRTHYKVQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPT 628
            +K Y +GEWK S +   + I  P +      V A S EEV+ V  +AK AQ  W      +RA  LHK A IL   K  I   L KE+AK  K AV+EV+R+ ++++Y AEEG+R+  EG+ L   SF    + K  +  + P+G+ LAI PFNYPVNLA SKIAPALIAGN +  KPPT
Sbjct:    5 YKNYVNGEWKLSEN--EIKIYEPASGAELGSVPAMSTEEVDYVYASAKKAQPAWRSLSYIERAAYLHKVADILMRDKEKIGAVLSKEVAKGYKSAVSEVVRTAEIINYAAEEGLRM--EGEVLEGGSFEAASKKKIAVVRREPVGLVLAISPFNYPVNLAGSKIAPALIAGNVIAFKPPT 180          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: ALDH_BACST (Aldehyde dehydrogenase, thermostable OS=Bacillus stearothermophilus GN=aldHT PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.573e-23
Identity = 65/176 (36.93%), Postives = 96/176 (54.55%), Query Frame = 2
Query:   98 YADGEWKKSNSGKSVPIVNPTTRRTHYK-VQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKP 622
            Y +G W  S S    P +NP  R      VQ  + E+VN+ + AA  AQ  W K    +R E L+KAA IL++    IAE + +E+ K   +A  E +R   ++ Y A EG R +G       D  P ++      T+++PLGV   I P+N+PV + + K+APAL+ GN++VLKP
Sbjct:   13 YINGNWVSSVSNNVEPSINPANRHDIVGYVQRSTLEDVNEAVTAANEAQTSWWKRSGVERGEYLYKAAHILEQCLQDIAETMTREMGKTLAEAKAETMRGVHILRYYAGEGARKIG-------DVIPSSDSEGLLFTTRVPLGVVGVISPWNFPVAIPIWKMAPALVYGNTVVLKP 181          
BLAST of CF503908 vs. ExPASy Swiss-Prot
Match: ALDH1_BACSU (Probable aldehyde dehydrogenase ycbD OS=Bacillus subtilis GN=ycbD PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.020e-22
Identity = 62/187 (33.16%), Postives = 99/187 (52.94%), Query Frame = 2
Query:   71 ILDGDVFKYYADGEWKKSNSGKSVPIVNPTTRRTHYK-VQACSQEEVNKVMEAAKAAQKLWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVIRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVGLAIPPFNYPVNLAVSKIAPALIAGNSLVLKPPT 628
            I + + +  + +GEW KS SG  V + NP         VQ  + E+V + + AA  A+  W K    +R + L+K A I+++    IA C  +E+ K   +A  E  R   ++ Y A EG+R  G       D  P  ++     T+++PLGV   I P+N+PV + + K+APAL+ GN++V+KP T
Sbjct:    4 ITEQNTYLNFINGEWVKSQSGDMVKVENPADVNDIVGYVQNSTAEDVERAVTAANEAKTAWRKLTGAERGQYLYKTADIMEQRLEEIAACATREMGKTLPEAKGETARGIAILRYYAGEGMRKTG-------DVIPSTDKDALMFTTRVPLGVVGVISPWNFPVAIPIWKMAPALVYGNTVVIKPAT 183          
The following BLAST results are available for this feature:
BLAST of CF503908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 413
Match NameE-valueIdentityDescription
GAPN_NICPL8.729e-9990.26NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
GAPN_PEA3.317e-9889.74NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
GAPN_APIGR9.033e-9686.15NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
GAPN_ARATH4.483e-9586.67NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
GAPN_WHEAT7.157e-9384.62NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
GAPN_MAIZE7.913e-9283.08NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
GAPN_STREI2.500e-3750.00NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
GAPN_STRMU1.517e-3446.11NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]
ALDH_BACST1.573e-2336.93Aldehyde dehydrogenase, thermostable OS=Bacillus s... [more]
ALDH1_BACSU1.020e-2233.16Probable aldehyde dehydrogenase ycbD OS=Bacillus s... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-395 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503908 ID=CF503908; Name=CF503908; organism=Citrus sinensis; type=EST; length=629bp
CTTCTTCAACTAGTTTACTCTGTTGGGTGGTTCATTGTGAGAAATGGCTG
GCAATGGTATTTTTGCTGAGATTTTAGATGGGGACGTGTTCAAGTACTAT
GCTGATGGCGAATGGAAGAAGTCTAATTCTGGCAAAAGCGTTCCCATTGT
CAACCCCACTACTCGCAGAACTCACTACAAAGTTCAGGCTTGTTCACAAG
AGGAGGTGAACAAGGTAATGGAAGCAGCAAAAGCTGCACAAAAATTATGG
GCAAAGACTCCGCTTTGGAAGAGAGCTGAGCTCCTGCACAAGGCTGCTGC
AATTCTCAAAGAGCACAAGGCCCCCATTGCTGAGTGTTTGGTTAAAGAAA
TTGCAAAGCCAGCTAAAGATGCTGTCACTGAGGTTATAAGGTCTGGAGAT
TTGGTCTCTTATTGTGCCGAAGAGGGTGTTCGGATTCTCGGAGAAGGGAA
GTTTTTGGTGTCTGATAGCTTCCCCGGAAATGAGAGGACTAAGTATTGTC
TCACTTCAAAGATTCCACTTGGTGTGGGTTTGGCCATTCCACCGTTCAAC
TATCCAGTCAATCTTGCCGTTTCCAAAATTGCTCCTGCACTGATTGCTGG
AAATTCCCTTGTGCTTAAGCCTCCTACTC
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