CF503918

Overview
NameCF503918
Unique NameCF503918
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length462
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:160..621. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503918 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 2.180e-79
Identity = 147/153 (96.08%), Postives = 148/153 (96.73%), Query Frame = 3
Query:    3 FAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMGVRRPAHIFLDELGIDYDEQD 461
            FAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTD    GAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAM VR+PAHIFLDELGIDYDEQD
Sbjct:    9 FAPSVSSTTNKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHIFLDELGIDYDEQD 161          
BLAST of CF503918 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 4.141e-54
Identity = 101/139 (72.66%), Postives = 118/139 (84.89%), Query Frame = 3
Query:   45 SSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMGVRRPAHIFLDELGIDYDEQD 461
            SSF+G P++PS +R+QP K+    ++S+S + SPPYDL  F FDPIKESIVSREMTRRYM DMITYADTD    GAGS+GL C YELSKNP++Q+AIIEQSVSPGGGAWLGGQLFS M VR+PAH+FLDELGI+YDEQD
Sbjct:   20 SSFYGTPLAPSSIRVQPTKAGAKPSISMSGAPSPPYDLKAFTFDPIKESIVSREMTRRYMMDMITYADTDVVVVGAGSSGLVC-YELSKNPSVQVAIIEQSVSPGGGAWLGGQLFSGMVVRKPAHLFLDELGIEYDEQD 157          
BLAST of CF503918 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 1.473e-51
Identity = 103/151 (68.21%), Postives = 123/151 (81.46%), Query Frame = 3
Query:   12 SVSSTT-NKLFDSSFHGAPMSPSLLRLQPIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMGVRRPAHIFLDELGIDYDEQD 461
            S+SST   +LFDSSFHG+ +S + + +      +P + S+ A+ +  YDLN F FDPIKESIVSREMTRRYMTDMITYA+TD    GAGSAGLS AYE+SKNPN+Q+AIIEQSVSPGGGAWLGGQLFSAM VR+PAH+FLDE+G+ YDEQD
Sbjct:    9 SLSSTKPQRLFDSSFHGSAISAAPISI----GLKPRSFSVRATTAG-YDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQD 154          
BLAST of CF503918 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 3.754e-47
Identity = 99/157 (63.06%), Postives = 115/157 (73.25%), Query Frame = 3
Query:   18 SSTTNKLFDSSFHGAPMSPSLLRLQ---------PIKSSRPNNLSISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMGVRRPAHIFLDELGIDYDEQD 461
            ++  + L  SSF G+ + PS  R           P     P   SIS S +PPYDL +F+F PIKESIVSREMTRRYMTDMIT+ADTD    GAGSAGLSCAYELSK+P + +AI+EQSVSPGGGAWLGGQLFSAM VRRPAH+FLDELG+ YDE +
Sbjct:    3 TTAASSLLKSSFAGSRL-PSATRTTTPSSVAVATPRAGGGPIRASIS-SPNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITHADTDVVIVGAGSAGLSCAYELSKDPTVSVAIVEQSVSPGGGAWLGGQLFSAMVVRRPAHLFLDELGVGYDEAE 157          
BLAST of CF503918 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 6.403e-47
Identity = 99/159 (62.26%), Postives = 117/159 (73.58%), Query Frame = 3
Query:   18 SSTTNKLFDSSFHGAPMSPSLLRLQPIK----------SSRPNNLSISASAS-PPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMGVRRPAHIFLDELGIDYDEQD 461
            ++  + L  SSF G+ + P+  R  P             + P   S+S S+S PPYDL +F+F PIKESIVSREMTRRYMTDMITYADTD    GAGSAGLSCAYELSK+P + IAI+EQSVSPGGGAWLGGQLFSAM VR+PAH+FLDELG+ YDE +
Sbjct:    3 TAAASSLLKSSFAGSRL-PAATRTTPASLVVATGPRGAGAGPICASMSMSSSNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKDPAVSIAIVEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVAYDEAE 160          
BLAST of CF503918 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.213e-29
Identity = 64/98 (65.31%), Postives = 78/98 (79.59%), Query Frame = 3
Query:  165 FKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSK-NPNIQIAIIEQSVSPGGGAWLGGQLFSAMGVRRPAHIFLDELGIDYDE 455
            FKF PI+ES VSR MTRRY  D+  YA++D    GAGS GLS AY L+K  P+++IAI+E SVSPGGGAWLGGQLFSAM +RRPA +FL+ELG+ Y+E
Sbjct:   48 FKFAPIRESQVSRAMTRRYFEDLDKYAESDVVIVGAGSCGLSTAYVLAKARPDLKIAIVEASVSPGGGAWLGGQLFSAMVMRRPAEVFLNELGVPYEE 145          
BLAST of CF503918 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.584e-29
Identity = 63/111 (56.76%), Postives = 87/111 (78.38%), Query Frame = 3
Query:  132 ASASPPYDLN-TFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYEL-SKNPNIQIAIIEQSVSPGGGAWLGGQLFSAMGVRRPAHIFLDELGIDYDEQ 458
            + A P Y L+ +F F PI+ES VSR MTRRY +D+  YA++D    GAGSAGL+ AY + ++ P+++IAIIE SV+PGGGAWLGGQLFSAM VR+PA +FL+E+G+ Y+++
Sbjct:   37 SKAYPTYSLDESFSFAPIRESTVSRAMTRRYFSDLDKYAESDIVIVGAGSAGLTAAYYIGTRRPDLKIAIIEASVAPGGGAWLGGQLFSAMVVRKPADLFLNEIGVPYEDE 147          
BLAST of CF503918 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 6.657e-28
Identity = 62/99 (62.63%), Postives = 76/99 (76.77%), Query Frame = 3
Query:  165 FKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMGVRRPAHIFLDELGIDYDEQ 458
            FKF PI+ES VSR MTRRY  D+  YA++D    GAGS GLS AY L K  P+++IAIIE SVSPGGGAWLGGQLFSAM +R+PA  FL E+G+ Y+++
Sbjct:   44 FKFAPIRESQVSRAMTRRYFQDLDNYAESDIVIIGAGSCGLSAAYILGKKRPDLKIAIIEASVSPGGGAWLGGQLFSAMIMRKPADAFLREVGVPYEDE 142          
BLAST of CF503918 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.135e-27
Identity = 59/103 (57.28%), Postives = 79/103 (76.70%), Query Frame = 3
Query:  153 DLNTFKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMGVRRPAHIFLDELGIDYDEQ 458
            D + FKF PI+ES VSR MT RY  D+  +A +D    GAGS+GLS AY ++KN P++++ IIE SV+PGGG+WLGGQLFSAM +R+PAH+FL EL I Y+++
Sbjct:   34 DWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDE 136          
BLAST of CF503918 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.530e-27
Identity = 61/99 (61.62%), Postives = 75/99 (75.76%), Query Frame = 3
Query:  165 FKFDPIKESIVSREMTRRYMTDMITYADTDXXXXGAGSAGLSCAYELSKN-PNIQIAIIEQSVSPGGGAWLGGQLFSAMGVRRPAHIFLDELGIDYDEQ 458
            FKF PI+ES VSR MTRRY  D+  YA++D    GAGS GLS  Y L K  P+++IAIIE SVSPGGGAWLGGQLFSAM +R+PA  FL E+G+ Y+++
Sbjct:   48 FKFAPIRESQVSRAMTRRYFQDLDNYAESDIVIVGAGSCGLSTRYILGKKRPDLKIAIIEASVSPGGGAWLGGQLFSAMVMRKPADAFLREVGVPYEDE 146          
The following BLAST results are available for this feature:
BLAST of CF503918 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
THI4_CITSI2.180e-7996.08Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL4.141e-5472.66Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH1.473e-5168.21Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI42_MAIZE3.754e-4763.06Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI41_MAIZE6.403e-4762.26Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI4_ASPOR1.213e-2965.31Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI2_SCHPO1.584e-2956.76Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_FUSOX6.657e-2862.63Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_YEAST1.135e-2757.28Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_FUSSH2.530e-2761.62Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-406 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_C06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503918 ID=CF503918; Name=CF503918; organism=Citrus sinensis; type=EST; length=462bp
CTTTCGCTCCTTCAGTTTCGTCCACCACCAATAAGCTCTTTGACTCATCC
TTTCATGGGGCTCCCATGTCACCTTCTCTTCTACGTCTTCAACCCATCAA
ATCTTCTCGTCCCAACAACTTGTCCATTTCTGCTTCTGCTTCTCCTCCTT
ATGACTTGAACACTTTCAAGTTTGACCCCATCAAAGAATCCATTGTTTCT
CGTGAAATGACACGCAGGTACATGACGGACATGATCACTTATGCTGACAC
TGATGTGGTAGTGGTTGGTGCTGGCTCTGCTGGCCTCTCTTGTGCTTATG
AGCTCAGCAAAAACCCCAACATTCAGATTGCTATTATCGAACAGTCTGTT
AGCCCCGGCGGTGGCGCGTGGCTCGGTGGACAGCTCTTCTCTGCCATGGG
TGTGCGCAGACCAGCCCACATCTTCCTTGACGAGCTTGGCATCGACTACG
ATGAGCAAGACA
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