CF503925

Overview
NameCF503925
Unique NameCF503925
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1707 contig Csv1_Contig1707:518..975. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF503925 vs. ExPASy Swiss-Prot
Match: Y1736_ARATH (REF/SRPP-like protein At1g67360 OS=Arabidopsis thaliana GN=At1g67360 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 2.656e-12
Identity = 23/42 (54.76%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   85 PQPAQWSKKYNHLVVEMTKKGYTVFGYLPLVPIDDIAKAFKQ 210
            P  A +S +YN LV +MT  GY++ GYLPLVP+DDI KA+++
Sbjct:  167 PVAAHFSSRYNDLVTDMTNMGYSLVGYLPLVPVDDIVKAYEK 208

HSP 2 Score: 36.5798 bits (83), Expect = 2.656e-12
Identity = 17/35 (48.57%), Postives = 19/35 (54.29%), Query Frame = 2 
Query:    5 LVTNSVKAWYKLNHYALFHTMADMACSHSLHSGPR 109
            +VTNSVK W KLN Y   H M D A   + H   R
Sbjct:  141 VVTNSVKVWAKLNQYKPIHAMGDKALPVAAHFSSR 175
The following BLAST results are available for this feature:
BLAST of CF503925 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1736_ARATH2.656e-1254.76REF/SRPP-like protein At1g67360 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-413 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_D01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503925 ID=CF503925; Name=CF503925; organism=Citrus sinensis; type=EST; length=460bp
CCTTCTGGTAACAAATTCCGTGAAAGCATGGTATAAACTAAACCACTATG
CATTGTTCCACACAATGGCAGATATGGCGTGTTCCCACAGCCTGCACAGT
GGTCCAAGAAGTATAACCATCTTGTCGTGGAGATGACGAAGAAGGGTTAC
ACAGTCTTTGGCTATCTTCCTTTGGTTCCCATTGATGACATAGCCAAAGC
TTTTAAGCAGAGTGAAGCTCCCAAGAAAGAAGATGCTCCAGAGAAAGAAG
ATGCTCCAAAGAAAGAAGATGCAAAGGAAAAGGATTCAAGCTCAGATTCT
GACTAAGAATTTACTTTTTGTCTGATGAGTTTGCTTCATCTAGTGGTCTG
GTTTGCAAAATTCTAGGCTTGAAGGTGTGGCCGGGTAGTGGCAGTATGGT
TTGTAATCTGTAAATGACCTTTAAGACTTGGTTTTCCCCATATGTGAATG
GAGATAAATG
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