CF503927

Overview
NameCF503927
Unique NameCF503927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length506
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig507 contig Csv1_Contig507:1..507. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGMC1_ARATH (Probable phosphoglucomutase, cytoplasmic 1 OS=Arabidopsis thaliana GN=At1g23190 PE=1 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 5.892e-85
Identity = 153/168 (91.07%), Postives = 158/168 (94.05%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAPE ITDKIYENTKTI EY IA+DLP+VDISA GVTSF GPEG+FDVEVFD A DYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVAGAYA RIFVEELGAQES+LLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKS+T  EPPEFGAAADGDADRNMILG
Sbjct:  142 GGPAPESITDKIYENTKTIKEYPIAQDLPNVDISAVGVTSFEGPEGKFDVEVFDPADDYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVAGAYAHRIFVEELGAQESALLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSDTGGEPPEFGAAADGDADRNMILG 309          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGMC_POPTN (Phosphoglucomutase, cytoplasmic OS=Populus tremula GN=PGM1 PE=2 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 4.988e-84
Identity = 152/168 (90.48%), Postives = 158/168 (94.05%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAPEGITDKIYENTKTI EY  A DLPDVDI+  GVTSF G EGQFDVEVFDSASDY+KLMKSIFDFE+IRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNC PKEDFGGGHPDPNLTYAKELVARMGLGKSN++ EPPEFGAAADGDADRNM+LG
Sbjct:  143 GGPAPEGITDKIYENTKTIKEYLTA-DLPDVDITTIGVTSFSGSEGQFDVEVFDSASDYIKLMKSIFDFESIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCVPKEDFGGGHPDPNLTYAKELVARMGLGKSNSEVEPPEFGAAADGDADRNMVLG 309          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGMC_PEA (Phosphoglucomutase, cytoplasmic OS=Pisum sativum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 3.346e-80
Identity = 141/168 (83.93%), Postives = 155/168 (92.26%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAPEGIT+KIYENT TI EY IA DLP+VDI+  GVT+F GPEG FD+EVFDSASDY+KLMKSIFDFE+IRKLL+SPKF+FCYDALHGVAGAYAKRIFV+ELGAQE+SL+NC PKEDFGGGHPDPNLTYAKELVARMGLGKS  + E PEFGAAADGDADRNM+LG
Sbjct:  143 GGPAPEGITNKIYENTTTIKEYLIAPDLPNVDITTVGVTNFTGPEGPFDIEVFDSASDYIKLMKSIFDFESIRKLLTSPKFSFCYDALHGVAGAYAKRIFVDELGAQENSLINCVPKEDFGGGHPDPNLTYAKELVARMGLGKSEPEGEVPEFGAAADGDADRNMVLG 310          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGMC1_MAIZE (Phosphoglucomutase, cytoplasmic 1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 296.204 bits (757), Expect = 5.707e-80
Identity = 141/168 (83.93%), Postives = 153/168 (91.07%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAPE +TDKI+ NT TI+EY I+EDLPDVDIS  GVTSF GPEG FDV+VFDS+ DY+KLMK+IFDFEAI+KLL+SPKFTFCYDALHGVAGAYAK IFVEELGA ESSLLNC PKEDFGGGHPDPNLTYAKELV RMGLGKS++  EPPEFGAAADGDADRNMILG
Sbjct:  143 GGPAPESVTDKIFSNTTTISEYLISEDLPDVDISVVGVTSFSGPEGPFDVDVFDSSVDYIKLMKTIFDFEAIKKLLTSPKFTFCYDALHGVAGAYAKHIFVEELGADESSLLNCVPKEDFGGGHPDPNLTYAKELVERMGLGKSSSNVEPPEFGAAADGDADRNMILG 310          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGMC2_ARATH (Probable phosphoglucomutase, cytoplasmic 2 OS=Arabidopsis thaliana GN=At1g70730 PE=1 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 1.660e-79
Identity = 146/169 (86.39%), Postives = 152/169 (89.94%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKS-NTQDEPPEFGAAADGDADRNMILG 504
            GGPAPE ITDKIYENTKTI EY IAEDLP VDIS  G+TSF GPEG+FDVEVFDSA DYVKLMKSIFDFE+I+KLLS PKFTFCYDALHGVAGAYA RIFVEELGA ESSLLNC PKEDFGGGHPDPNLTYAKELVARMGL K+ +   EPPEFGAAADGDADRNMILG
Sbjct:  143 GGPAPESITDKIYENTKTIKEYPIAEDLPRVDISTIGITSFEGPEGKFDVEVFDSADDYVKLMKSIFDFESIKKLLSYPKFTFCYDALHGVAGAYAHRIFVEELGAPESSLLNCVPKEDFGGGHPDPNLTYAKELVARMGLSKTDDAGGEPPEFGAAADGDADRNMILG 311          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGMC2_MAIZE (Phosphoglucomutase, cytoplasmic 2 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 2.169e-79
Identity = 140/168 (83.33%), Postives = 153/168 (91.07%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAPE +TDKI+ NT TI+EY I+EDLPDVDIS  GVTSF GPEG FDV+VFDS+ +Y+KLMK+IFDFEAI+KLL+SPKFTFCYDALHGVAGAYAK IFVEELGA ESSLLNC PKEDFGGGHPDPNLTYAKELV RMGLGKS++  EPPEFGAAADGDADRNMILG
Sbjct:  143 GGPAPESVTDKIFSNTTTISEYLISEDLPDVDISVVGVTSFSGPEGPFDVDVFDSSVNYIKLMKTIFDFEAIKKLLTSPKFTFCYDALHGVAGAYAKHIFVEELGADESSLLNCVPKEDFGGGHPDPNLTYAKELVERMGLGKSSSNVEPPEFGAAADGDADRNMILG 310          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGMC_MESCR (Phosphoglucomutase, cytoplasmic OS=Mesembryanthemum crystallinum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 2.832e-79
Identity = 141/168 (83.93%), Postives = 152/168 (90.48%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPA EG+T+KIYENT TI EY IA++LP+V+IS  GVTSF GP+GQFDVEVFD+   YVKLMKSIFDF+AI+KLLS P FTFCYDALHGVAG YAKRIFV+ELGA ESSLLNCTPKEDFGGGHPDPNLTYAKELV RMGLGKSNTQ EPPEFGAAADGDADRNMILG
Sbjct:  143 GGPAQEGVTNKIYENTTTIKEYLIAKELPNVNISKTGVTSFSGPDGQFDVEVFDATETYVKLMKSIFDFQAIKKLLSIPSFTFCYDALHGVAGVYAKRIFVDELGANESSLLNCTPKEDFGGGHPDPNLTYAKELVERMGLGKSNTQGEPPEFGAAADGDADRNMILG 310          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGMC_SOLTU (Phosphoglucomutase, cytoplasmic OS=Solanum tuberosum GN=PGM1 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 3.462e-77
Identity = 136/168 (80.95%), Postives = 152/168 (90.48%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAPEGIT+KIYENT TI EY IAE LPDVDIS  GV+SF GP+G+FDV+VFDS SDY+KL+KSIFDF AI+KLLSSPKF+FCYDALHGVAG +AKRIFVEELGA ESSL+NC PKEDFGGGHPDPNLTYAKELVARMGL K++++  PPEFGAAADGD DRNM+LG
Sbjct:  143 GGPAPEGITNKIYENTTTIKEYLIAEGLPDVDISTTGVSSFEGPKGKFDVDVFDSTSDYLKLLKSIFDFPAIQKLLSSPKFSFCYDALHGVAGVHAKRIFVEELGANESSLVNCVPKEDFGGGHPDPNLTYAKELVARMGLSKTHSEPNPPEFGAAADGDGDRNMVLG 310          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGMC_BROIN (Phosphoglucomutase, cytoplasmic OS=Bromus inermis GN=PGM1 PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 4.522e-77
Identity = 137/168 (81.55%), Postives = 154/168 (91.67%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            GGPAPE +TDKI+ NTKTI+EY IAEDLPDVDIS  GVT+F GPEG FDV+VFDSA++YVKLMK+IFDFE+I+KLL+SPKF+FC+D +HGVAGAYAKRIFV+ELGA ESSLLNC PKEDFGGGHPDPNLTYAKELV RMGLGK++   EPPEFGAAADGDADRNMILG
Sbjct:  142 GGPAPESVTDKIFSNTKTISEYLIAEDLPDVDISVIGVTTFTGPEGPFDVDVFDSATEYVKLMKTIFDFESIKKLLASPKFSFCFDGMHGVAGAYAKRIFVDELGASESSLLNCVPKEDFGGGHPDPNLTYAKELVDRMGLGKTSNV-EPPEFGAAADGDADRNMILG 308          
BLAST of CF503927 vs. ExPASy Swiss-Prot
Match: PGMP_ARATH (Phosphoglucomutase, chloroplastic OS=Arabidopsis thaliana GN=PGMP PE=1 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 1.419e-46
Identity = 96/168 (57.14%), Postives = 118/168 (70.24%), Query Frame = 1
Query:    1 GGPAPEGITDKIYENTKTINEYSIAEDLPDVDISAAGVTSFGGPEGQFDVEVFDSASDYVKLMKSIFDFEAIRKLLSSPKFTFCYDALHGVAGAYAKRIFVEELGAQESSLLNCTPKEDFGGGHPDPNLTYAKELVARMGLGKSNTQDEPPEFGAAADGDADRNMILG 504
            G PAPE ITDKIY NT +I+E  +AE +PD+D+S  GVT +G     F VEV D  SDY++LM+ +FDF+ IR LLS   F F +DA+H V GAYAK IFV+ LGA+  S+ N  P EDFG GHPDPNLTYAK+LV  M       +D  P+FGAA+DGD DRNM+LG
Sbjct:  200 GQPAPETITDKIYGNTLSISEIKVAE-IPDIDLSQVGVTKYGN----FSVEVIDPVSDYLELMEDVFDFDLIRGLLSRSDFGFMFDAMHAVTGAYAKPIFVDNLGAKPDSISNGVPLEDFGHGHPDPNLTYAKDLVDVM------YRDNGPDFGAASDGDGDRNMVLG 356          
The following BLAST results are available for this feature:
BLAST of CF503927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
PGMC1_ARATH5.892e-8591.07Probable phosphoglucomutase, cytoplasmic 1 OS=Arab... [more]
PGMC_POPTN4.988e-8490.48Phosphoglucomutase, cytoplasmic OS=Populus tremula... [more]
PGMC_PEA3.346e-8083.93Phosphoglucomutase, cytoplasmic OS=Pisum sativum G... [more]
PGMC1_MAIZE5.707e-8083.93Phosphoglucomutase, cytoplasmic 1 OS=Zea mays PE=2... [more]
PGMC2_ARATH1.660e-7986.39Probable phosphoglucomutase, cytoplasmic 2 OS=Arab... [more]
PGMC2_MAIZE2.169e-7983.33Phosphoglucomutase, cytoplasmic 2 OS=Zea mays PE=2... [more]
PGMC_MESCR2.832e-7983.93Phosphoglucomutase, cytoplasmic OS=Mesembryanthemu... [more]
PGMC_SOLTU3.462e-7780.95Phosphoglucomutase, cytoplasmic OS=Solanum tuberos... [more]
PGMC_BROIN4.522e-7781.55Phosphoglucomutase, cytoplasmic OS=Bromus inermis ... [more]
PGMP_ARATH1.419e-4657.14Phosphoglucomutase, chloroplastic OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-415 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503927 ID=CF503927; Name=CF503927; organism=Citrus sinensis; type=EST; length=506bp
GGAGGACCTGCTCCGGAGGGAATCACCGATAAGATCTATGAGAACACAAA
AACAATAAATGAGTACTCAATTGCAGAAGATCTACCAGATGTGGATATCT
CTGCTGCAGGTGTAACCAGCTTTGGGGGGCCTGAGGGACAATTTGATGTT
GAAGTTTTTGATTCAGCTAGTGACTATGTGAAATTGATGAAGTCAATTTT
TGACTTCGAGGCGATCCGCAAGCTACTTTCATCTCCAAAATTCACATTCT
GCTATGATGCACTACATGGAGTTGCCGGTGCATATGCCAAACGCATATTT
GTAGAAGAGCTTGGTGCACAAGAAAGCTCGTTGTTAAACTGCACACCAAA
GGAGGACTTTGGGGGAGGGCATCCAGATCCCAATTTGACTTATGCAAAAG
AGTTGGTTGCTCGTATGGGATTGGGTAAATCAAACACTCAAGATGAACCG
CCAGAGTTTGGTGCTGCTGCTGATGGTGATGCGGATCGTAACATGATCCT
TGGCAA
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