CF503929

Overview
NameCF503929
Unique NameCF503929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length522
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503929 vs. ExPASy Swiss-Prot
Match: NADB_VIBCH (L-aspartate oxidase OS=Vibrio cholerae GN=nadB PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 5.673e-17
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 1
Query:  301 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 522
            D  VIGSG AGL  AL+VA++G V V++K    E  T YAQGG++AV   SDS+ESH+QDT++AGA +CD++TV
Sbjct:   10 DVLVIGSGAAGLSLALQVAQYGKVIVLSKGPRSEGATFYAQGGIAAVFDESDSIESHVQDTLIAGAGICDEQTV 83          
BLAST of CF503929 vs. ExPASy Swiss-Prot
Match: NADB_YERPE (L-aspartate oxidase OS=Yersinia pestis GN=nadB PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.442e-14
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 1
Query:  274 LRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 522
            ++  S    D  +IGSG AGL  AL +A H  V V++K   +E  T YAQGG++AV   +DS+ SH+ DT++AGA LCD E V
Sbjct:    1 MQSSSEHISDVLIIGSGAAGLSLALRLAPHCKVTVLSKGPLNEGATFYAQGGIAAVFDETDSISSHVDDTLIAGAGLCDKEAV 83          
BLAST of CF503929 vs. ExPASy Swiss-Prot
Match: NADB_PSEAE (L-aspartate oxidase OS=Pseudomonas aeruginosa GN=nadB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.668e-14
Identity = 38/74 (51.35%), Postives = 54/74 (72.97%), Query Frame = 1
Query:  301 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 522
            D  VIGSG AGL  AL + +H  +AV++K E  + +T +AQGGV+AVL  +D+VESH++DT+VAG  LC ++ V
Sbjct:    8 DVLVIGSGAAGLSLALTLPEHLRIAVLSKGELSQGSTYWAQGGVAAVLDDTDTVESHVEDTLVAGGGLCREDAV 81          
BLAST of CF503929 vs. ExPASy Swiss-Prot
Match: NADB_SYNY3 (L-aspartate oxidase OS=Synechocystis sp. (strain PCC 6803) GN=nadB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.308e-13
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query:  298 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 522
            FD  V+GSG AGL   L +  H  VA++TKAE     +++AQGG++A + P+DS +SH +DT+ AGA LCD E V
Sbjct:    6 FDVVVVGSGAAGLYACLCLPGHYRVALVTKAELKTGASDWAQGGIAAAIAPTDSPQSHYEDTLAAGAGLCDGEAV 80          
BLAST of CF503929 vs. ExPASy Swiss-Prot
Match: NADB_SALTY (L-aspartate oxidase OS=Salmonella typhimurium GN=nadB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.308e-13
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 1
Query:  247 LRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 522
            + T P LSC         D  +IGSG AGL  AL +A+   V V++K    E +T YAQGG++AV   +DS+ SH++DT++AGA +CD   V
Sbjct:    1 MMTTPELSC---------DVLIIGSGAAGLSLALRLAEKHKVIVLSKGPVSEGSTFYAQGGIAAVFDETDSIASHVEDTLIAGAGICDRHAV 83          
BLAST of CF503929 vs. ExPASy Swiss-Prot
Match: NADB_SALTI (L-aspartate oxidase OS=Salmonella typhi GN=nadB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.308e-13
Identity = 40/92 (43.48%), Postives = 56/92 (60.87%), Query Frame = 1
Query:  247 LRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 522
            + T P LSC         D  +IGSG AGL  AL +A+   V V++K    E +T YAQGG++AV   +DS+ SH++DT++AGA +CD   V
Sbjct:    1 MMTTPELSC---------DVLIIGSGAAGLSLALRLAEKHKVIVLSKGPVSEGSTFYAQGGIAAVFDETDSIASHVEDTLIAGAGICDRHAV 83          
BLAST of CF503929 vs. ExPASy Swiss-Prot
Match: NADB1_RALSO (L-aspartate oxidase 1 OS=Ralstonia solanacearum GN=nadB1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.231e-13
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = 1
Query:  298 FDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDD 513
            FD +V+GSG+AGL  AL +A H  V VI+K    E  +++AQGG++AVL  +DS + H+ DT++AGA LCD+
Sbjct:    3 FDVAVVGSGLAGLTVALHLADHRRVVVISKRTLPEGASDWAQGGIAAVLDSNDSHDEHVDDTLIAGAGLCDE 74          
BLAST of CF503929 vs. ExPASy Swiss-Prot
Match: NADB_ECOLI (L-aspartate oxidase OS=Escherichia coli (strain K12) GN=nadB PE=1 SV=4)

HSP 1 Score: 74.3294 bits (181), Expect = 3.805e-13
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 1
Query:  247 LRTVPVLSCLRDGSVKYFDFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 522
            + T+P  SC         D  +IGSG AGL  AL +A    V V++K    E +T YAQGG++AV   +DS++SH++DT++AGA +CD   V
Sbjct:    1 MNTLPEHSC---------DVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAV 83          
BLAST of CF503929 vs. ExPASy Swiss-Prot
Match: NADB_ECO57 (L-aspartate oxidase OS=Escherichia coli O157:H7 GN=nadB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.477e-13
Identity = 35/74 (47.30%), Postives = 50/74 (67.57%), Query Frame = 1
Query:  301 DFSVIGSGVAGLCYALEVAKHGTVAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 522
            D  +IGSG AGL  AL +A    V V++K    E +T YAQGG++AV   +DS++SH++DT++AGA +CD   V
Sbjct:   10 DVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEGSTFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAV 83          
BLAST of CF503929 vs. ExPASy Swiss-Prot
Match: NADB_STRCO (L-aspartate oxidase OS=Streptomyces coelicolor GN=nadB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.224e-11
Identity = 37/75 (49.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:  301 DFSVIGSGVAGLCYALEVAKHGT-VAVITKAEPHESNTNYAQGGVSAVLCPSDSVESHMQDTIVAGAYLCDDETV 522
            D  V+GSGVAGL  AL     G    V+TKA   + +T +AQGGV+A L   D+ E H+ DT+VAGA LCD + V
Sbjct:   20 DVVVVGSGVAGLTAALRCESAGLRTVVVTKARLDDGSTRWAQGGVAAALGEGDTPEQHLDDTLVAGAGLCDQDAV 94          
The following BLAST results are available for this feature:
BLAST of CF503929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
NADB_VIBCH5.673e-1756.76L-aspartate oxidase OS=Vibrio cholerae GN=nadB PE=... [more]
NADB_YERPE3.442e-1446.99L-aspartate oxidase OS=Yersinia pestis GN=nadB PE=... [more]
NADB_PSEAE7.668e-1451.35L-aspartate oxidase OS=Pseudomonas aeruginosa GN=n... [more]
NADB_SYNY31.308e-1349.33L-aspartate oxidase OS=Synechocystis sp. (strain P... [more]
NADB_SALTY1.308e-1343.48L-aspartate oxidase OS=Salmonella typhimurium GN=n... [more]
NADB_SALTI1.308e-1343.48L-aspartate oxidase OS=Salmonella typhi GN=nadB PE... [more]
NADB1_RALSO2.231e-1350.00L-aspartate oxidase 1 OS=Ralstonia solanacearum GN... [more]
NADB_ECOLI3.805e-1342.39L-aspartate oxidase OS=Escherichia coli (strain K1... [more]
NADB_ECO578.477e-1347.30L-aspartate oxidase OS=Escherichia coli O157:H7 GN... [more]
NADB_STRCO1.224e-1149.33L-aspartate oxidase OS=Streptomyces coelicolor GN=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-417 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_D06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503929 ID=CF503929; Name=CF503929; organism=Citrus sinensis; type=EST; length=522bp
GTGGCGCCTCGGTAGTGTAGGCGAATGATTGCAATGGCAACTGGTGTAGC
TGCCGGAACTAGCAATTTTCATTTCGGAGGGATCCGCTGCAAGGGACAAA
GCTGCCAACAAGCTTCTTTGGTTTCCAGTCTGACATTTAATGGATGCATA
CAGAGAGAGCTCTCGTGGTCATTTGGGGTATCCAGGTTCTTACGTTTCCA
GAGGTTTAATTTCTCTCATTCTCCGGTGAGTGAGAATTGGAAGTCCCTCA
GAACAGTCCCTGTATTGTCTTGCTTGAGAGATGGCTCTGTAAAGTATTTT
GATTTTTCTGTCATTGGGAGTGGAGTTGCCGGCCTCTGCTATGCTCTTGA
AGTTGCAAAACATGGAACTGTTGCTGTGATCACAAAGGCAGAGCCTCATG
AGAGCAACACTAACTATGCCCAAGGTGGTGTTAGTGCTGTGCTTTGCCCT
TCAGATTCTGTTGAGAGTCACATGCAGGACACAATTGTCGCAGGGGCTTA
TCTATGTGATGACGAAACTGTT
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