CF503946

Overview
NameCF503946
Unique NameCF503946
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10290 contig Csv1_Contig10290:355..1050. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503946 vs. ExPASy Swiss-Prot
Match: MIRA_RICDU (Miraculin OS=Richadella dulcifica PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 63/204 (30.88%), Postives = 97/204 (47.55%), Query Frame = 2
Query:    2 ALTTKPQLGASES--EPILDVYGNQVDSSHRYYLVSALWGVKTGGGISADKGK-NGQ--CPTDVIQLSPKDKRGKNLVLLP-NDNSIIVRESTNIKLKFSRVSSLQQCNKDSLWKVDNDNASLGKQFITIGEGK------TCQNLFKLEKVSASIFDMKIALDIPCLYKIVHCSTPVNGSCDTLCKDVGV-SNVDGVQRLVVVD 574
            A    P L A++S   P+LD+ G ++ +   YY+V  L     GGG++      NG   CP  V+Q   +    + L   P N    +VR ST++ + FS     +  +  ++W++D  + S G+ F+TIG  K      T  + FK+E+   S F           YK+V C T V GSC   C DVG+  +  G +RL + D
Sbjct:   19 AAAANPLLSAADSAPNPVLDIDGEKLRTGTNYYIVPVLRD--HGGGLTVSATTPNGTFVCPPRVVQTRKEVDHDRPLAFFPENPKEDVVRVSTDLNINFSAFMPCRWTSS-TVWRLDKYDESTGQYFVTIGGVKGNPGPETISSWFKIEEFCGSGF-----------YKLVFCPT-VCGSCKVKCGDVGIYIDQKGRRRLALSD 207          
BLAST of CF503946 vs. ExPASy Swiss-Prot
Match: ASP_THECC (21 kDa seed protein OS=Theobroma cacao GN=ASP PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 51/189 (26.98%), Postives = 92/189 (48.68%), Query Frame = 2
Query:   38 SEPILDVYGNQVDSSHRYYLVSALWGVKTGGGISADKGKNGQCPTDVIQLSPKDKRGKNLVLLPNDN-SIIVRESTNIKLKFSRVSSLQQCNKDSLWKVDNDNASLGKQFITIGEGK------TCQNLFKLEKVSASIFDMKIALDIPCLYKIVHCSTPVNGSCDTLCKDVGVSNVDGVQRLVVVDDND 583
            + P+LD  G+++ +  +YY++S++ G   GGG++  +     CP  V+Q       G  ++    D+   +VR ST++ ++F  +   + C+  ++W++DN + S GK ++T    K      T  + FK+EK                 YK   C + V  SC TLC D+G  + D  Q  + + DN+
Sbjct:   28 NSPVLDTDGDELQTGVQYYVLSSISGA-GGGGLALGRATGQSCPEIVVQRRSDLDNGTPVIFSNADSKDDVVRVSTDVNIEFVPIRD-RLCSTSTVWRLDNYDNSAGKWWVTTDGVKGEPGPNTLCSWFKIEKAGV------------LGYKFRFCPS-VCDSCTTLCSDIGRHSDDDGQIRLALSDNE 201          
BLAST of CF503946 vs. ExPASy Swiss-Prot
Match: SPOR1_IPOBA (Sporamin A OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 48/144 (33.33%), Postives = 77/144 (53.47%), Query Frame = 2
Query:   29 ASESEPILDVYGNQVDSSHRYYLVSALWGVKTGGGISADKGKNGQCPTDVIQLSPKD-KRGKNLVLLP---NDNSIIVRESTNIKLKFSRVSSLQQCNKDSLWKVDNDNASLGKQFITIGE-GKTCQNLFKLEKVSASIFDMKI 445
            AS   P+LD+ G++V +   YY+VSA+WG   GG   A      +C TDVI +SP D   G  + + P   +  S +V  ST    +F+ +++ + C  +  W + +D+AS G+ F+  GE      N FK+E V A++   K+
Sbjct:   37 ASSETPVLDINGDEVRAGGNYYMVSAIWGAGGGGLRLAHLDMMSKCATDVI-VSPNDLDNGDPITITPATADPESTVVMASTYQTFRFN-IATNKLCVNNVNWGIQHDSAS-GQYFLKAGEFVSDNSNQFKIELVDANLNSYKL 177          
The following BLAST results are available for this feature:
BLAST of CF503946 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MIRA_RICDU1.169e-1230.88Miraculin OS=Richadella dulcifica PE=1 SV=3[more]
ASP_THECC5.801e-1226.9821 kDa seed protein OS=Theobroma cacao GN=ASP PE=2... [more]
SPOR1_IPOBA3.760e-1133.33Sporamin A OS=Ipomoea batatas PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-434 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503946 ID=CF503946; Name=CF503946; organism=Citrus sinensis; type=EST; length=697bp
TGCTTTGACCACAAAACCTCAGTTGGGCGCCTCAGAATCTGAACCTATCT
TAGATGTCTATGGCAACCAGGTGGACTCCAGCCACAGGTATTATCTTGTC
TCAGCACTCTGGGGAGTTAAAACCGGCGGTGGAATTAGCGCGGACAAAGG
CAAAAATGGACAGTGTCCAACGGATGTTATCCAATTAAGTCCTAAGGACA
AAAGGGGAAAGAATTTAGTTTTACTTCCGAATGACAATTCCATAATTGTC
CGGGAGTCCACTAATATTAAATTGAAATTCTCAAGAGTTTCTTCTCTTCA
GCAGTGTAACAAAGATTCGTTGTGGAAAGTTGACAACGATAACGCTTCAT
TAGGAAAGCAGTTTATAACAATCGGTGAAGGTAAAACGTGTCAAAATTTG
TTTAAACTTGAGAAAGTTAGTGCATCAATATTTGATATGAAAATAGCACT
AGACATTCCCTGTCTATACAAAATTGTTCATTGTTCAACACCTGTTAATG
GTTCTTGTGATACACTCTGCAAAGACGTTGGCGTTTCTAATGTGGATGGC
GTCCAACGTCTAGTTGTGGTTGATGATAATGATCAGCCAAATCTGCCTTT
GCCTGTTGTGGTATTTCCAGCTGATAGTGGAAGATCTATGTTATTTCCGT
CTCTGTAATGAATAAGCCAGCAGGCTGTATTATTCTAATAATGGACC
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