CF503956

Overview
NameCF503956
Unique NameCF503956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: Y1461_ARATH (Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.432e-69
Identity = 120/191 (62.83%), Postives = 153/191 (80.10%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKKSKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFSTKPYACDLSSLPIYPPSKEIDAKHR-EDARRKRVVEE 571
            +++ GVLK+ADFGLA   +  H++P+TSRVVTLWYR PELLLGATDYG  +DLWS GC+ AELL G+PI+ GRTEVEQLHKI+KLCGSP +DYWKK K  H  ++KP++PY  S+RETFKD P +++ LI+ LLS+EP  R TASAAL SE+F+++PYAC+ + LP YPPSKEIDAK R E+ RR+R   +
Sbjct:  250 IDDGGVLKIADFGLATIFDPNHKRPMTSRVVTLWYRAPELLLGATDYGVGIDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSEDYWKKGKFTHGAIYKPREPYKRSIRETFKDFPPSSLPLIDALLSIEPEDRQTASAALKSEFFTSEPYACEPADLPKYPPSKEIDAKRRDEETRRQRAASK 440          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDKC2_ORYSJ (Cyclin-dependent kinase C-2 OS=Oryza sativa subsp. japonica GN=CDKC-2 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.317e-50
Identity = 102/204 (50.00%), Postives = 136/204 (66.67%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWK-KSKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFSTKPYACDLSSLPIYPPSKEIDAKHREDARRKRVVEEFVELRQERLHENP 610
            ++NEG LKLADFGLA   ++ H   LT+RV+TLWYRPPELLLG+T YGP+VD+WSVGC+FAELL GKPIL G+ E EQL KIF+LCG+P +  W   +K+P    FKPQ+P    ++E+FK     A++L+E +L+++P +R +A  AL +EYF T P  CD  SLP Y  S E   K +   +R+    E    RQ+  H  P
Sbjct:  172 IDNEGNLKLADFGLARSFSSDHNGNLTNRVITLWYRPPELLLGSTRYGPAVDMWSVGCIFAELLNGKPILTGKNEPEQLSKIFELCGTPDELIWPGVTKMPWYNNFKPQRPMKRRVKESFKHFDQHALDLLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYEASHEFQTKKKRQQQRQ---AEEAAKRQKLQHPPP 372          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDKC1_ARATH (Cyclin-dependent kinase C-1 OS=Arabidopsis thaliana GN=CDKC-1 PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.808e-49
Identity = 101/206 (49.03%), Postives = 135/206 (65.53%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWK-KSKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFSTKPYACDLSSLPIYPPSKEIDAKHREDARRKRVVEEFVELRQERLHENPME 616
            ++NEG LKLADFGLA   +  H   LT+RV+TLWYRPPELLLGAT YGP++D+WSVGC+FAELL  KPIL G+ E EQL+KIF+LCGSP +  W   SK+P    FKP +P    +RE F+     A+ L+E +L ++P +R +A  AL +EYF T P  CD  SLP Y  S E   K +   +R+   EE    ++++L   P++
Sbjct:  172 IDNEGNLKLADFGLARSYSHDHTGNLTNRVITLWYRPPELLLGATKYGPAIDMWSVGCIFAELLHAKPILPGKNEQEQLNKIFELCGSPDEKLWPGVSKMPWFNNFKPARPLKRRVREFFRHFDRHALELLEKMLVLDPAQRISAKDALDAEYFWTDPLPCDPKSLPTYESSHEFQTKKKRQQQRQN--EE--AAKRQKLQHPPLQ 373          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDKC2_ARATH (Cyclin-dependent kinase C-2 OS=Arabidopsis thaliana GN=CDKC-2 PE=1 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 3.105e-48
Identity = 98/197 (49.75%), Postives = 129/197 (65.48%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWK-KSKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFSTKPYACDLSSLPIYPPSKEIDAK-------HREDARRKRVVE 568
            ++NEG LKLADFGLA   +  H   LT+RV+TLWYRPPELLLGAT YGP++D+WSVGC+FAELL GKPIL G+TE EQL+KI++LCGSP +  W   SK+P     K  +P    +RE ++     A+ L+E +L ++P +R  A  AL +EYF T P  CD  SLP Y  S E   K       H E+A +K+ ++
Sbjct:  172 IDNEGNLKLADFGLARSYSHDHTGNLTNRVITLWYRPPELLLGATKYGPAIDMWSVGCIFAELLNGKPILPGKTENEQLNKIYELCGSPDESNWPGVSKMPWYNQMKSSRPLKRRVREIYRHFDRHALELLEKMLVLDPSQRICAKDALDAEYFWTDPLPCDPKSLPTYESSHEFQTKKKRQQMRHNEEAAKKQKLQ 368          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDKC1_ORYSJ (Cyclin-dependent kinase C-1 OS=Oryza sativa subsp. japonica GN=CDKC-1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.013e-47
Identity = 97/204 (47.55%), Postives = 130/204 (63.73%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWK-KSKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFSTKPYACDLSSLPIYPPSKEIDAKHREDARRKRVVEEFVELRQERLHENP 610
            ++NEG LKLADFGLA   +  H   LT+RV+TLWYRPPELLLG+T YGP+VD+WSVGC+FAELL GKPIL G+ E EQL KIF +CG+P +  W   +K+P    FKP +     ++E FK     A++L+E +L+++P +R +A  AL +EYF + P  CD  SLP Y  S E   K +    R+    +    RQ+  H  P
Sbjct:  172 IDNEGNLKLADFGLARSFSNDHNGNLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLNGKPILPGKNEPEQLSKIFDVCGTPDESNWPGVTKMPWYNNFKPPRQLKRRVKEYFKHFDRLALDLLEKMLTLDPAQRISAQDALDAEYFWSDPLPCDPKSLPKYESSHEFQTKKKRQQMRQ---ADEAAKRQKTQHPQP 372          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDK13_MOUSE (Cell division protein kinase 13 OS=Mus musculus GN=Cdk13 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.087e-36
Identity = 77/200 (38.50%), Postives = 116/200 (58.00%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKK-SKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYF-STKPYACDLSSLPIYPPSKEIDAKHREDARRKRVVEEFVELRQER 595
            +NN G +KLADFGLA   ++   +P T++V+TLWYRPPELLLG   Y P++D+WS GC+  EL   KPI Q   E+ QL  I ++CGSP    W    KLP+    KP++ Y   LRE F  +P  A++L + +L+++P KR TA  AL  E+    +P       LP++    E+ +K R   ++  + ++   ++  R
Sbjct:  845 LNNRGQIKLADFGLARLYSSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRICGSPCPAVWPDVIKLPYFNTMKPKKQYRRKLREEFVFIPAAALDLFDYMLALDPSKRCTAEQALQCEFLRDVEPSKMPPPDLPLWQDCHELWSKKRRRQKQMGMTDDLSTIKAPR 1044          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDK12_HUMAN (Cell division protein kinase 12 OS=Homo sapiens GN=CDK12 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.087e-36
Identity = 80/192 (41.67%), Postives = 113/192 (58.85%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKK-SKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFSTKPYA-CDLSSLPIYPPSKEIDAKHREDARRKRVVEE 571
            +NN G +KLADFGLA   N+   +P T++V+TLWYRPPELLLG   Y P++D+WS GC+  EL   KPI Q   E+ QL  I +LCGSP    W    KLP+    KP++ Y   LRE F  +P+ A++L++ +L+++P KR TA   L S++      +      LP +    E+ +K R   R+  VV E
Sbjct:  867 LNNSGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPSAALDLLDHMLTLDPSKRCTAEQTLQSDFLKDVELSKMAPPDLPHWQDCHELWSKKRRRQRQSGVVVE 1058          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDK13_HUMAN (Cell division protein kinase 13 OS=Homo sapiens GN=CDK13 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.726e-36
Identity = 77/200 (38.50%), Postives = 116/200 (58.00%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKK-SKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYF-STKPYACDLSSLPIYPPSKEIDAKHREDARRKRVVEEFVELRQER 595
            +NN G +KLADFGLA   ++   +P T++V+TLWYRPPELLLG   Y P++D+WS GC+  EL   KPI Q   E+ QL  I ++CGSP    W    KLP+    KP++ Y   LRE F  +P  A++L + +L+++P KR TA  AL  E+    +P       LP++    E+ +K R   ++  + ++   ++  R
Sbjct:  845 LNNRGQIKLADFGLARLYSSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRICGSPCPAVWPDVIKLPYFNTMKPKKQYRRKLREEFVFIPAAALDLFDYMLALDPSKRCTAEQALQCEFLRDVEPSKMPPPDLPLWQDCHELWSKKRRRQKQMGMTDDVSTIKAPR 1044          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDK12_RAT (Cell division protein kinase 12 OS=Rattus norvegicus GN=Cdk12 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.561e-36
Identity = 79/192 (41.15%), Postives = 113/192 (58.85%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKK-SKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFSTKPYA-CDLSSLPIYPPSKEIDAKHREDARRKRVVEE 571
            +NN G +KLADFGLA   N+   +P T++V+TLWYRPPELLLG   Y P++D+WS GC+  EL   KPI Q   E+ QL  I +LCGSP    W    KLP+    KP++ Y   LRE F  +P+ A++L++ +L+++P KR TA   L S++      +      LP +    E+ +K R   R+  +V E
Sbjct:  863 LNNSGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPSAALDLLDHMLTLDPSKRCTAEQTLQSDFLKDVELSKMAPPDLPHWQDCHELWSKKRRRQRQSGIVIE 1054          
BLAST of CF503956 vs. ExPASy Swiss-Prot
Match: CDK12_MOUSE (Cell division protein kinase 12 OS=Mus musculus GN=Cdk12 PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.561e-36
Identity = 79/192 (41.15%), Postives = 113/192 (58.85%), Query Frame = 2
Query:    2 VNNEGVLKLADFGLANFSNTGHRQPLTSRVVTLWYRPPELLLGATDYGPSVDLWSVGCVFAELLIGKPILQGRTEVEQLHKIFKLCGSPPDDYWKK-SKLPHATLFKPQQPYDSSLRETFKDLPTTAVNLIETLLSVEPYKRATASAALASEYFSTKPYA-CDLSSLPIYPPSKEIDAKHREDARRKRVVEE 571
            +NN G +KLADFGLA   N+   +P T++V+TLWYRPPELLLG   Y P++D+WS GC+  EL   KPI Q   E+ QL  I +LCGSP    W    KLP+    KP++ Y   LRE F  +P+ A++L++ +L+++P KR TA   L S++      +      LP +    E+ +K R   R+  +V E
Sbjct:  863 LNNSGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYTPAIDVWSCGCILGELFTKKPIFQANLELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQYRRRLREEFSFIPSAALDLLDHMLTLDPSKRCTAEQTLQSDFLKDVELSKMAPPDLPHWQDCHELWSKKRRRQRQSGIVIE 1054          
The following BLAST results are available for this feature:
BLAST of CF503956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y1461_ARATH1.432e-6962.83Probable serine/threonine-protein kinase At1g54610... [more]
CDKC2_ORYSJ3.317e-5050.00Cyclin-dependent kinase C-2 OS=Oryza sativa subsp.... [more]
CDKC1_ARATH2.808e-4949.03Cyclin-dependent kinase C-1 OS=Arabidopsis thalian... [more]
CDKC2_ARATH3.105e-4849.75Cyclin-dependent kinase C-2 OS=Arabidopsis thalian... [more]
CDKC1_ORYSJ2.013e-4747.55Cyclin-dependent kinase C-1 OS=Oryza sativa subsp.... [more]
CDK13_MOUSE2.087e-3638.50Cell division protein kinase 13 OS=Mus musculus GN... [more]
CDK12_HUMAN2.087e-3641.67Cell division protein kinase 12 OS=Homo sapiens GN... [more]
CDK13_HUMAN2.726e-3638.50Cell division protein kinase 13 OS=Homo sapiens GN... [more]
CDK12_RAT3.561e-3641.15Cell division protein kinase 12 OS=Rattus norvegic... [more]
CDK12_MOUSE3.561e-3641.15Cell division protein kinase 12 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-444 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503956 ID=CF503956; Name=CF503956; organism=Citrus sinensis; type=EST; length=721bp
GGTGAACAATGAAGGAGTCCTCAAGTTGGCCGACTTTGGATTGGCAAACT
TCTCTAATACTGGACATCGACAACCCTTAACCAGTCGTGTTGTGACTTTA
TGGTATCGTCCACCCGAACTTTTGCTTGGCGCCACAGATTATGGACCGTC
TGTGGATCTTTGGAGTGTTGGCTGTGTGTTTGCAGAACTTCTCATAGGGA
AACCCATCCTTCAAGGGAGAACGGAGGTAGAACAACTACACAAAATTTTC
AAGCTTTGTGGGTCCCCACCTGATGATTACTGGAAAAAATCAAAACTTCC
TCATGCTACTCTGTTCAAACCACAACAACCTTATGACAGTAGTCTTCGAG
AAACATTCAAAGATTTGCCCACAACTGCCGTGAACCTGATAGAAACTTTA
CTTTCAGTAGAGCCATACAAGCGTGCAACTGCCTCTGCAGCCCTAGCATC
TGAGTATTTCTCAACAAAGCCTTATGCTTGCGATCTGTCAAGTTTGCCAA
TATATCCACCAAGCAAAGAGATTGATGCAAAACATCGTGAAGATGCACGC
AGGAAAAGGGTGGTGGAAGAGTTCGTGGAGCTGAGACAAGAAAGACTACA
CGAAAATCCCATGGAATGAGTAAATTGGCACCCGTAGAGGATGTGGCAGT
GCGGACTCAGTTTGCTAAAAAAATTAACGGACATAGTTGCATATTTTGAA
AGATGATGAGTTGTCTGGTAG
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