CF503962

Overview
NameCF503962
Unique NameCF503962
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF503962_ssr521 microsatellite CF503962_ssr521:521..532. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF503962 vs. ExPASy Swiss-Prot
Match: KIF2C_MOUSE (Kinesin-like protein KIF2C OS=Mus musculus GN=Kif2c PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.610e-43
Identity = 90/176 (51.14%), Postives = 120/176 (68.18%), Query Frame = 2
Query:  107 RKRPLNKKELSRKEEDIVTVSDNALT-VHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM------------QPLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMREDGRQQVCIVGLQDFEV 595
            RKRPLNK+EL++KE D+++V    L  VHEPKLKVDLT Y+E   FCFD   DE  +N+ VYR T  P++ TIF+  KATCFAYGQTGSGKT TM            + +   A+ D+  L +QP YRN   ++++++FEIY GK+FDLL ++ KL + ED RQQV +VGLQ++ V
Sbjct:  260 RKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSRQQVQVVGLQEYLV 435          
BLAST of CF503962 vs. ExPASy Swiss-Prot
Match: KIF2C_MACFA (Kinesin-like protein KIF2C OS=Macaca fascicularis GN=KIF2C PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 6.118e-43
Identity = 88/173 (50.87%), Postives = 118/173 (68.21%), Query Frame = 2
Query:  107 RKRPLNKKELSRKEEDIVTVSDNALT-VHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM------------QPLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMREDGRQQVCIVGLQD 586
            RKRPLNK+EL++KE D++++    L  VHEPKLKVDLT Y+E   FCFD   DE  +N+ VYR T  P++ TIF+  KATCFAYGQTGSGKT TM            + +   A+ D+  L +QP YR    ++++++FEIY GKLFDLL ++ KL + EDG+QQV +VGLQ+
Sbjct:  210 RKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAKLRVLEDGKQQVQVVGLQE 382          
BLAST of CF503962 vs. ExPASy Swiss-Prot
Match: KIF2C_HUMAN (Kinesin-like protein KIF2C OS=Homo sapiens GN=KIF2C PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 6.118e-43
Identity = 88/173 (50.87%), Postives = 118/173 (68.21%), Query Frame = 2
Query:  107 RKRPLNKKELSRKEEDIVTVSDNALT-VHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM------------QPLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMREDGRQQVCIVGLQD 586
            RKRPLNK+EL++KE D++++    L  VHEPKLKVDLT Y+E   FCFD   DE  +N+ VYR T  P++ TIF+  KATCFAYGQTGSGKT TM            + +   A+ D+  L +QP YR    ++++++FEIY GKLFDLL ++ KL + EDG+QQV +VGLQ+
Sbjct:  264 RKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKAKLRVLEDGKQQVQVVGLQE 436          
BLAST of CF503962 vs. ExPASy Swiss-Prot
Match: KIF2C_CRIGR (Kinesin-like protein KIF2C OS=Cricetulus griseus GN=KIF2C PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 6.118e-43
Identity = 89/176 (50.57%), Postives = 119/176 (67.61%), Query Frame = 2
Query:  107 RKRPLNKKELSRKEEDIVTVSDNALT-VHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM------------QPLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMREDGRQQVCIVGLQDFEV 595
            RKRPLNK+EL++KE D+++V    L  VHEPKLKVDLT Y+E   FCFD   DE  +N+ VYR T  P++ TIF+  KATCFAYGQTGSGKT TM            + +   A+ D+  L  QP YRN   ++++++FEIY GK+FDLL ++ KL + ED +QQV +VGLQ++ V
Sbjct:  258 RKRPLNKQELAKKEIDVISVPSKCLLFVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNTSKGIYAMASRDVFLLKSQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKAKLRVLEDSKQQVQVVGLQEYLV 433          
BLAST of CF503962 vs. ExPASy Swiss-Prot
Match: KIF2C_RAT (Kinesin-like protein KIF2C OS=Rattus norvegicus GN=Kif2c PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 3.965e-42
Identity = 87/176 (49.43%), Postives = 120/176 (68.18%), Query Frame = 2
Query:  107 RKRPLNKKELSRKEEDIVTVSDNALT-VHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM------------QPLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMREDGRQQVCIVGLQDFEV 595
            RKRPLNK+EL++KE D+++V    L  VHEPKLKVDLT Y+E   FCFD   DE  +N+ VYR T  P++ TIF+  KATCFAYGQTGSGKT TM            + +   A+ D+  L +QP YR+   ++++++FEIY GK+F+LL ++ KL + ED +QQV +VGLQ++ V
Sbjct:  210 RKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRSLNLEVYVTFFEIYNGKVFELLNKKAKLRVLEDSKQQVQVVGLQEYLV 385          
BLAST of CF503962 vs. ExPASy Swiss-Prot
Match: KIF2B_MACFA (Kinesin-like protein KIF2B OS=Macaca fascicularis GN=KIF2B PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.276e-40
Identity = 84/176 (47.73%), Postives = 119/176 (67.61%), Query Frame = 2
Query:  107 RKRPLNKKELSRKEEDIVTV-SDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM------------QPLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMREDGRQQVCIVGLQDFEV 595
            RKRPLN++E + K+ DI+TV SDN + VHE K KVDLT Y+E   FCFD   D++ +N+ VY+ T +P++ +IF++  ATCFAYGQTGSGKT+TM            + +    A+D+  LL   +Y     K++ ++FEIYGGK++DLL  +KKL + EDG QQ+ +VGLQ+ EV
Sbjct:  216 RKRPLNQRETTLKDLDIITVPSDNVVMVHESKQKVDLTRYLENQTFCFDHAFDDKASNELVYQFTAQPLVESIFRKGMATCFAYGQTGSGKTYTMGGDFAGRAQDHSKGIYALVAQDVFLLLRNSIYEKLDLKVYGTFFEIYGGKVYDLLNWKKKLQVLEDGNQQIQVVGLQEQEV 391          
BLAST of CF503962 vs. ExPASy Swiss-Prot
Match: KIF2C_XENLA (Kinesin-like protein KIF2C OS=Xenopus laevis GN=kif2c PE=1 SV=2)

HSP 1 Score: 164.081 bits (414), Expect = 4.847e-40
Identity = 88/176 (50.00%), Postives = 119/176 (67.61%), Query Frame = 2
Query:  107 RKRPLNKKELSRKEEDIVTV-SDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM------------QPLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMREDGRQQVCIVGLQDFEV 595
            RKRPLNK+ELS+KE DI++V S N + VHEPKLKVDLT Y+E   F FD   DE  TN+ VYR T  P++ +IF+  KATCFAYGQTGSGKT TM            + +   A+ D+  LL QP Y++    +++++FEIY GK+FDLL ++ KL + ED +Q+V +VGL + +V
Sbjct:  268 RKRPLNKQELSKKEIDIISVPSKNIVLVHEPKLKVDLTKYLENQAFRFDFSFDETATNEVVYRFTARPLVQSIFEGGKATCFAYGQTGSGKTHTMGGDFSGKSQNVSKGVYAFASRDVFLLLDQPRYKHLDLDVFVTFFEIYNGKVFDLLNKKTKLRVLEDAKQEVQVVGLLEKQV 443          
BLAST of CF503962 vs. ExPASy Swiss-Prot
Match: KIF2B_HUMAN (Kinesin-like protein KIF2B OS=Homo sapiens GN=KIF2B PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 6.331e-40
Identity = 83/176 (47.16%), Postives = 118/176 (67.05%), Query Frame = 2
Query:  107 RKRPLNKKELSRKEEDIVTV-SDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM------------QPLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMREDGRQQVCIVGLQDFEV 595
            RKRPLN++E + K+ DI+TV SDN + VHE K KVDLT Y++   FCFD   D++ +N+ VY+ T +P++ +IF++  ATCFAYGQTGSGKT+TM            + +    A+D+  LL    Y     K++ ++FEIYGGK++DLL  +KKL + EDG QQ+ +VGLQ+ EV
Sbjct:  219 RKRPLNQRETTLKDLDIITVPSDNVVMVHESKQKVDLTRYLQNQTFCFDHAFDDKASNELVYQFTAQPLVESIFRKGMATCFAYGQTGSGKTYTMGGDFSGTAQDCSKGIYALVAQDVFLLLRNSTYEKLDLKVYGTFFEIYGGKVYDLLNWKKKLQVLEDGNQQIQVVGLQEKEV 394          
BLAST of CF503962 vs. ExPASy Swiss-Prot
Match: KIF2B_MOUSE (Kinesin-like protein KIF2B OS=Mus musculus GN=Kif2b PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.269e-40
Identity = 84/176 (47.73%), Postives = 116/176 (65.91%), Query Frame = 2
Query:  107 RKRPLNKKELSRKEEDIVTV-SDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM------------QPLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMREDGRQQVCIVGLQDFEV 595
            RKRPLN++E + K+ DI+T+ S N + VHE K KVDLT Y+E   FCFD   D++ +N+ VY+ T  P++ +IF++  ATCFAYGQTGSGKT TM            + +    A+D+  LL  P Y     K++ ++FEIYGGK++DLL  +KKL + EDG QQV +VGLQ+ EV
Sbjct:  219 RKRPLNQRETTMKDLDIITIPSHNVVMVHESKQKVDLTRYLENQTFCFDHAFDDKASNELVYQFTARPLVESIFRKGMATCFAYGQTGSGKTHTMGGAFLGKAQDCSKGIYALVAQDVFLLLKTPAYEKLELKVYGTFFEIYGGKVYDLLNWKKKLQVLEDGNQQVQVVGLQEQEV 394          
BLAST of CF503962 vs. ExPASy Swiss-Prot
Match: KIF2A_RAT (Kinesin-like protein KIF2A OS=Rattus norvegicus GN=Kif2a PE=2 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 8.269e-40
Identity = 85/176 (48.30%), Postives = 114/176 (64.77%), Query Frame = 2
Query:  107 RKRPLNKKELSRKEEDIVTV-SDNALTVHEPKLKVDLTAYVEKHEFCFDAVLDERVTNDEVYRVTVEPIIPTIFQRTKATCFAYGQTGSGKTFTM------------QPLPLRAAEDLVRLLHQPVYRNQRFKLWLSYFEIYGGKLFDLLGERKKLCMREDGRQQVCIVGLQDFEV 595
            RKRPLNKKE   K+ D++T+ S + + VHEPK KVDLT Y+E   F FD   D+   N+ VYR T  P++ TIF+R  ATCFAYGQTGSGKT TM            + +   AA D+  +L +P Y+    +++ ++FEIY GK+FDLL  + KL + EDG+QQV +VGLQ+ EV
Sbjct:  228 RKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDCSGKNQDCSKGIYALAARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKTKLRVLEDGKQQVQVVGLQEREV 403          
The following BLAST results are available for this feature:
BLAST of CF503962 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
KIF2C_MOUSE1.610e-4351.14Kinesin-like protein KIF2C OS=Mus musculus GN=Kif2... [more]
KIF2C_MACFA6.118e-4350.87Kinesin-like protein KIF2C OS=Macaca fascicularis ... [more]
KIF2C_HUMAN6.118e-4350.87Kinesin-like protein KIF2C OS=Homo sapiens GN=KIF2... [more]
KIF2C_CRIGR6.118e-4350.57Kinesin-like protein KIF2C OS=Cricetulus griseus G... [more]
KIF2C_RAT3.965e-4249.43Kinesin-like protein KIF2C OS=Rattus norvegicus GN... [more]
KIF2B_MACFA1.276e-4047.73Kinesin-like protein KIF2B OS=Macaca fascicularis ... [more]
KIF2C_XENLA4.847e-4050.00Kinesin-like protein KIF2C OS=Xenopus laevis GN=ki... [more]
KIF2B_HUMAN6.331e-4047.16Kinesin-like protein KIF2B OS=Homo sapiens GN=KIF2... [more]
KIF2B_MOUSE8.269e-4047.73Kinesin-like protein KIF2B OS=Mus musculus GN=Kif2... [more]
KIF2A_RAT8.269e-4048.30Kinesin-like protein KIF2A OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-450 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_G05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503962 ID=CF503962; Name=CF503962; organism=Citrus sinensis; type=EST; length=597bp
CAGCAAAAAGAGCAAACTGATGCAGATGCCTCAGCTCCAGTTCCCACAAA
TGAAAAAGAGAGCAATGCCAGAGAAAATAATGTGGCTAAAATTAGAGTTG
TGGTACCGTAAAAGACCCTTAAACAAGAAGGAGCTCTCTAGGAAGGAGGA
GGATATTGTAACTGTGAGTGACAATGCTTTGACTGTCCATGAACCCAAGC
TAAAGGTGGACTTGACTGCATATGTGGAGAAGCATGAGTTCTGCTTTGAT
GCTGTTTTGGATGAACGTGTCACCAATGATGAGGTATATCGTGTCACTGT
GGAGCCAATTATTCCCACCATTTTTCAGCGAACAAAAGCAACGTGTTTTG
CATATGGGCAAACAGGGAGTGGTAAGACATTCACAATGCAACCATTACCT
CTTAGAGCAGCAGAAGATCTTGTTAGATTGTTGCACCAGCCTGTATATCG
TAATCAGCGATTCAAATTGTGGCTTAGCTATTTTGAGATATACGGTGGAA
AACTTTTTGATCTTCTCGGTGAAAGAAAGAAACTTTGCATGAGAGAAGAT
GGGCGACAACAAGTTTGCATTGTTGGGCTGCAAGATTTTGAAGTTTC
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