CF503964

Overview
NameCF503964
Unique NameCF503964
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2481 contig Csv1_Contig2481:7..583. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503964 vs. ExPASy Swiss-Prot
Match: TMED2_MOUSE (Transmembrane emp24 domain-containing protein 2 OS=Mus musculus GN=Tmed2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.048e-12
Identity = 50/163 (30.67%), Postives = 76/163 (46.63%), Query Frame = 1
Query:  100 ILALLMSLIGRLSS--LSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTN 576
            +LALL +L+   S   +S+  +  EC +E V   G  +   F V +           ID  +T P    ++     S  K+ F A   G YKFCF+N  S  TP+ V F I +G  P   ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N
Sbjct:    7 LLALLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAIN 162          
BLAST of CF503964 vs. ExPASy Swiss-Prot
Match: TMED2_HUMAN (Transmembrane emp24 domain-containing protein 2 OS=Homo sapiens GN=TMED2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.200e-12
Identity = 49/163 (30.06%), Postives = 76/163 (46.63%), Query Frame = 1
Query:  100 ILALLMSLIGRLSS--LSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTN 576
            +L LL +L+  +S   +S+  +  EC +E V   G  +   F V +           ID  +T P    ++     S  K+ F A   G YKFCF+N  S  TP+ V F I +G  P   ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N
Sbjct:    7 LLVLLAALLATVSGYFVSIDAHAEECFFERVT-SGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAIN 162          
BLAST of CF503964 vs. ExPASy Swiss-Prot
Match: TMED2_CRIGR (Transmembrane emp24 domain-containing protein 2 (Fragment) OS=Cricetulus griseus GN=TMED2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.791e-12
Identity = 49/163 (30.06%), Postives = 75/163 (46.01%), Query Frame = 1
Query:  100 ILALLMSLIGRLSS--LSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTN 576
            +L LL +L+   S   +S+  +  EC +E V   G  +   F V +           ID  +T P    ++     S  K+ F A   G YKFCF+N  S  TP+ V F I +G  P   ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N
Sbjct:    2 VLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAIN 157          
BLAST of CF503964 vs. ExPASy Swiss-Prot
Match: TMED2_RAT (Transmembrane emp24 domain-containing protein 2 OS=Rattus norvegicus GN=Tmed2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.869e-12
Identity = 49/163 (30.06%), Postives = 75/163 (46.01%), Query Frame = 1
Query:  100 ILALLMSLIGRLSS--LSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTN 576
            +L LL +L+   S   +S+  +  EC +E V   G  +   F V +           ID  +T P    ++     S  K+ F A   G YKFCF+N  S  TP+ V F I +G  P   ++  + H + +   I EL  A+ +V  EQ+Y+  R+  HR  N
Sbjct:    7 LLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAIN 162          
BLAST of CF503964 vs. ExPASy Swiss-Prot
Match: TMEDA_DICDI (Transmembrane emp24 domain-containing protein A OS=Dictyostelium discoideum GN=empA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1
Query:  100 ILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHT 573
            +L +  + I    S  V+    EC+YE +  +    A  F V+            IDFT+ SP   +V++ +  S      ++  +G+Y FCF+N  S  T +TVSF + VG       +AK + L PI   I  L + + +V +EQ Y + R+  HR+T
Sbjct:   13 LLCIASNSIVESFSFKVSAKVEECIYEEIGVDLSFTA-MFQVIQGGF------NDIDFTIISPDKRIVYSGQRESEGTKTLRSSFAGVYSFCFSNKMSSLTDKTVSFILSVGESSPIREIAKKKDLTPIERSIMTLSDGVIAVKNEQNYFKMREAAHRNT 165          
The following BLAST results are available for this feature:
BLAST of CF503964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TMED2_MOUSE3.048e-1230.67Transmembrane emp24 domain-containing protein 2 OS... [more]
TMED2_HUMAN5.200e-1230.06Transmembrane emp24 domain-containing protein 2 OS... [more]
TMED2_CRIGR6.791e-1230.06Transmembrane emp24 domain-containing protein 2 (F... [more]
TMED2_RAT8.869e-1230.06Transmembrane emp24 domain-containing protein 2 OS... [more]
TMEDA_DICDI2.581e-1130.00Transmembrane emp24 domain-containing protein A OS... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-452 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503964 ID=CF503964; Name=CF503964; organism=Citrus sinensis; type=EST; length=577bp
CTGCTCTGCCTCAGCTATCGACGTCATCGGTCATCACGCAGGATCTCAAA
ATCAAAGATGGAGAAGAGACAGAGACACAGATATGTAGCGACGTACATGA
TCCTAGCTCTTTTAATGAGCTTGATCGGCCGTCTGTCGTCTCTCTCGGTG
ACGGTAAATGACGTGGAATGCGTCTATGAGTACGTCATCTACGAAGGCGA
CACCGTAGCGGGAAATTTCGTGGTCGTTGACCACGACATCTTCTGGAGCA
CCGATCACCCCGGCATTGATTTCACTGTGACATCTCCTGCTGGAAATGTT
GTACACACTGTTAAGGGGACATCTGGAGACAAGTTTGAATTTAAGGCTCC
ACGAAGTGGGATGTACAAGTTCTGTTTTAATAATCCATATTCTACACCAG
AAACAGTCTCTTTCTATATTCATGTGGGCCATATTCCCAATGAGCATAAC
CTCGCCAAAGATGAACATCTAGACCCAATTAATGTGAAAATTGCTGAGTT
GAGGGAGGCATTGGAGTCTGTCGTGTCAGAGCAGAAGTACTTGAGAGCAC
GTGATACTCGACATCGTCATACAAATG
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