CF503964
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF503964 vs. ExPASy Swiss-Prot
Match: TMED2_MOUSE (Transmembrane emp24 domain-containing protein 2 OS=Mus musculus GN=Tmed2 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 3.048e-12 Identity = 50/163 (30.67%), Postives = 76/163 (46.63%), Query Frame = 1 Query: 100 ILALLMSLIGRLSS--LSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTN 576 +LALL +L+ S +S+ + EC +E V G + F V + ID +T P ++ S K+ F A G YKFCF+N S TP+ V F I +G P ++ + H + + I EL A+ +V EQ+Y+ R+ HR N Sbjct: 7 LLALLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAIN 162
BLAST of CF503964 vs. ExPASy Swiss-Prot
Match: TMED2_HUMAN (Transmembrane emp24 domain-containing protein 2 OS=Homo sapiens GN=TMED2 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.200e-12 Identity = 49/163 (30.06%), Postives = 76/163 (46.63%), Query Frame = 1 Query: 100 ILALLMSLIGRLSS--LSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTN 576 +L LL +L+ +S +S+ + EC +E V G + F V + ID +T P ++ S K+ F A G YKFCF+N S TP+ V F I +G P ++ + H + + I EL A+ +V EQ+Y+ R+ HR N Sbjct: 7 LLVLLAALLATVSGYFVSIDAHAEECFFERVT-SGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAIN 162
BLAST of CF503964 vs. ExPASy Swiss-Prot
Match: TMED2_CRIGR (Transmembrane emp24 domain-containing protein 2 (Fragment) OS=Cricetulus griseus GN=TMED2 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 6.791e-12 Identity = 49/163 (30.06%), Postives = 75/163 (46.01%), Query Frame = 1 Query: 100 ILALLMSLIGRLSS--LSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTN 576 +L LL +L+ S +S+ + EC +E V G + F V + ID +T P ++ S K+ F A G YKFCF+N S TP+ V F I +G P ++ + H + + I EL A+ +V EQ+Y+ R+ HR N Sbjct: 2 VLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAIN 157
BLAST of CF503964 vs. ExPASy Swiss-Prot
Match: TMED2_RAT (Transmembrane emp24 domain-containing protein 2 OS=Rattus norvegicus GN=Tmed2 PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 8.869e-12 Identity = 49/163 (30.06%), Postives = 75/163 (46.01%), Query Frame = 1 Query: 100 ILALLMSLIGRLSS--LSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHTN 576 +L LL +L+ S +S+ + EC +E V G + F V + ID +T P ++ S K+ F A G YKFCF+N S TP+ V F I +G P ++ + H + + I EL A+ +V EQ+Y+ R+ HR N Sbjct: 7 LLVLLAALLATASGYFVSIDAHAEECFFERVT-SGTKMGLIFEVAEGGFL------DIDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAIN 162
BLAST of CF503964 vs. ExPASy Swiss-Prot
Match: TMEDA_DICDI (Transmembrane emp24 domain-containing protein A OS=Dictyostelium discoideum GN=empA PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11 Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 1 Query: 100 ILALLMSLIGRLSSLSVTVNDVECVYEYVIYEGDTVAGNFVVVDHDIFWSTDHPGIDFTVTSPAGNVVHTVKGTSGDKFEFKAPRSGMYKFCFNNPYS--TPETVSFYIHVGHIPNEHNLAKDEHLDPINVKIAELREALESVVSEQKYLRARDTRHRHT 573 +L + + I S V+ EC+YE + + A F V+ IDFT+ SP +V++ + S ++ +G+Y FCF+N S T +TVSF + VG +AK + L PI I L + + +V +EQ Y + R+ HR+T Sbjct: 13 LLCIASNSIVESFSFKVSAKVEECIYEEIGVDLSFTA-MFQVIQGGF------NDIDFTIISPDKRIVYSGQRESEGTKTLRSSFAGVYSFCFSNKMSSLTDKTVSFILSVGESSPIREIAKKKDLTPIERSIMTLSDGVIAVKNEQNYFKMREAAHRNT 165 The following BLAST results are available for this feature:
BLAST of CF503964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CF503964 ID=CF503964; Name=CF503964; organism=Citrus sinensis; type=EST; length=577bpback to top |