CF503968

Overview
NameCF503968
Unique NameCF503968
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig512 contig Csv1_Contig512:1..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB3_ORYSJ (Tubulin beta-3 chain OS=Oryza sativa subsp. japonica GN=TUBB3 PE=2 SV=2)

HSP 1 Score: 292.738 bits (748), Expect = 5.062e-82
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 5.062e-82
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB5_ORYSJ (Tubulin beta-5 chain OS=Oryza sativa subsp. japonica GN=TUBB5 PE=1 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 6.603e-82
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGR+VPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRFVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 6.603e-82
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB7_MAIZE (Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 1.465e-81
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKY+GDSDLQLERINVYYNEASGGR+VPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYAGDSDLQLERINVYYNEASGGRFVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 1.465e-81
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB1_ELEIN (Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 1.465e-81
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKY+GDSDLQLERINVYYNEASGGR+VPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYAGDSDLQLERINVYYNEASGGRFVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 1.465e-81
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB3_SOYBN (Tubulin beta chain (Fragment) OS=Glycine max GN=TUBB PE=2 SV=2)

HSP 1 Score: 291.197 bits (744), Expect = 1.466e-81
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDS+LQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSELQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 1.466e-81
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB5_GOSHI (Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 4.242e-81
Identity = 134/137 (97.81%), Postives = 137/137 (100.00%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIGAKFWEVICDEHG+D+TGKY+GDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGVDNTGKYNGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 4.242e-81
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB7_ORYSJ (Tubulin beta-7 chain OS=Oryza sativa subsp. japonica GN=TUBB7 PE=2 SV=2)

HSP 1 Score: 287.345 bits (734), Expect = 2.089e-80
Identity = 133/137 (97.08%), Postives = 136/137 (99.27%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIGAKFWEVICDEHG+D TG+Y+GDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGVDATGRYAGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 2.089e-80
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB3_ELEIN (Tubulin beta-3 chain OS=Eleusine indica GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 2.089e-80
Identity = 132/137 (96.35%), Postives = 136/137 (99.27%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKY+GDSDLQLERINVYYNEA GGR+VPRAVLMDLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYAGDSDLQLERINVYYNEAGGGRFVPRAVLMDLEPGTMDSLRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 2.089e-80
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB4_WHEAT (Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4 PE=2 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 4.635e-80
Identity = 133/137 (97.08%), Postives = 136/137 (99.27%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIGAKFWEVICDEHGID TG+Y+GDSDLQLERINVYYNEASGGR+VPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDGTGRYAGDSDLQLERINVYYNEASGGRFVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 4.635e-80
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
[Close]
BLAST of CF503968 vs. ExPASy Swiss-Prot
Match: TBB3_WHEAT (Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 6.045e-80
Identity = 132/137 (96.35%), Postives = 136/137 (99.27%), Query Frame = 2 
Query:  158 MREILHIQGGQCGNQIGAKFWEVICDEHGIDHTGKYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 568
            MREILHIQGGQCGNQIGAKFWEVICDEHGID TGKY+GDSDLQLERINVYYNEASGGR+VPRAVLMDLEPGTMDS+RSGP+GQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH
Sbjct:    1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDQTGKYAGDSDLQLERINVYYNEASGGRFVPRAVLMDLEPGTMDSLRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCH 137

HSP 2 Score: 33.113 bits (74), Expect = 6.045e-80
Identity = 14/15 (93.33%), Postives = 15/15 (100.00%), Query Frame = 1 
Query:  616 QIREEYPDRMMLTFS 660
            +IREEYPDRMMLTFS
Sbjct:  154 KIREEYPDRMMLTFS 168
The following BLAST results are available for this feature:
BLAST of CF503968 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
TBB3_ORYSJ5.062e-8299.27Tubulin beta-3 chain OS=Oryza sativa subsp. japoni... [more]
TBB5_ORYSJ6.603e-8299.27Tubulin beta-5 chain OS=Oryza sativa subsp. japoni... [more]
TBB7_MAIZE1.465e-8198.54Tubulin beta-7 chain OS=Zea mays GN=TUBB7 PE=2 SV=... [more]
TBB1_ELEIN1.465e-8198.54Tubulin beta-1 chain OS=Eleusine indica GN=TUBB1 P... [more]
TBB3_SOYBN1.466e-8198.54Tubulin beta chain (Fragment) OS=Glycine max GN=TU... [more]
TBB5_GOSHI4.242e-8197.81Tubulin beta-5 chain OS=Gossypium hirsutum PE=2 SV... [more]
TBB7_ORYSJ2.089e-8097.08Tubulin beta-7 chain OS=Oryza sativa subsp. japoni... [more]
TBB3_ELEIN2.089e-8096.35Tubulin beta-3 chain OS=Eleusine indica GN=TUBB3 P... [more]
TBB4_WHEAT4.635e-8097.08Tubulin beta-4 chain OS=Triticum aestivum GN=TUBB4... [more]
TBB3_WHEAT6.045e-8096.35Tubulin beta-3 chain OS=Triticum aestivum GN=TUBB3... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-456 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_G11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503968 ID=CF503968; Name=CF503968; organism=Citrus sinensis; type=EST; length=661bp
AAAGTCATTGTCAGTTCTATCACATCCAGTCCCTGAATGTTCATGCTTGA
AATATGATCCTACAGAATCGTATGTTAATGCTTCAAGTCCCCTACGTCTT
CCCAAACTTTCTCGCAAATTTTTCTCTCCCTTTCCCGCGAAACAAACAGA
ACAAAAAATGAGAGAAATCTTGCACATCCAGGGTGGGCAATGCGGCAACC
AGATCGGAGCCAAGTTCTGGGAGGTCATCTGCGACGAGCACGGAATTGAC
CACACGGGGAAGTACAGCGGAGACTCCGATCTCCAACTCGAACGCATCAA
TGTTTATTACAACGAGGCCAGCGGCGGAAGGTACGTCCCACGCGCCGTGT
TGATGGATCTGGAGCCTGGGACCATGGACTCTGTTAGATCCGGTCCGTTC
GGGCAGATATTTCGCCCCGATAACTTCGTGTTCGGGCAGTCTGGCGCTGG
CAATAACTGGGCCAAGGGTCATTACACCGAAGGCGCTGAGTTGATCGACT
CTGTTCTGGATGTTGTTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAG
GGATTTCAAGTATGTCATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGG
AACCCTTCTTATTTCCAGATCAGGGAGGAGTATCCAGATCGCATGATGTT
GACATTTTCCG
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