CF503969

Overview
NameCF503969
Unique NameCF503969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9251 contig Csv1_Contig9251:25..581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503969 vs. ExPASy Swiss-Prot
Match: SPOR1_IPOBA (Sporamin A OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.399e-11
Identity = 48/144 (33.33%), Postives = 77/144 (53.47%), Query Frame = 3
Query:   93 ASESEPILDVYGNQVDSSHRYYLVSALWGVKTGGGISADKGKNGQCPTDVIQLSPKD-KRGKNLVLLP---NDNSIIVRESTNIKLKFSRVSSLQQCNKDSLWKVDNDNASLGKQFIPIGE-GKTCQNLFKLEKVSASIFDMKI 509
            AS   P+LD+ G++V +   YY+VSA+WG   GG   A      +C TDVI +SP D   G  + + P   +  S +V  ST    +F+ +++ + C  +  W + +D+AS G+ F+  GE      N FK+E V A++   K+
Sbjct:   37 ASSETPVLDINGDEVRAGGNYYMVSAIWGAGGGGLRLAHLDMMSKCATDVI-VSPNDLDNGDPITITPATADPESTVVMASTYQTFRFN-IATNKLCVNNVNWGIQHDSAS-GQYFLKAGEFVSDNSNQFKIELVDANLNSYKL 177          
The following BLAST results are available for this feature:
BLAST of CF503969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SPOR1_IPOBA2.399e-1133.33Sporamin A OS=Ipomoea batatas PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-457 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503969 ID=CF503969; Name=CF503969; organism=Citrus sinensis; type=EST; length=557bp
GCTACCTCAAAAAAAATAAACAAATGAAGACTTCCTTAGTAACAACACTC
TCCTTCCTTATACTTGCTTTGACCACAAAACCTCAGTTGGGCGCCTCAGA
ATCTGAACCTATCTTAGATGTCTATGGCAACCAGGTGGACTCCAGCCACA
GGTATTATCTTGTCTCAGCACTCTGGGGAGTTAAAACCGGCGGTGGAATT
AGCGCGGACAAAGGCAAAAATGGACAGTGTCCAACGGATGTTATCCAATT
AAGTCCTAAGGACAAAAGGGGAAAGAATTTAGTTTTACTTCCGAATGACA
ATTCCATAATTGTCCGGGAGTCCACTAATATTAAATTGAAATTCTCAAGA
GTTTCTTCTCTTCAGCAGTGTAACAAAGATTCGTTGTGGAAAGTTGACAA
CGATAACGCTTCATTAGGAAAGCAGTTTATACCAATCGGTGAAGGTAAAA
CGTGTCAAAATTTGTTTAAACTTGAGAAAGTTAGTGCATCAATATTTGAT
ATGAAAATAGCACTAGACATTCCCTGTCTATACAAAATTGGTCATTGTTC
AACACCT
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