CF503970

Overview
NameCF503970
Unique NameCF503970
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig667 contig Csv1_Contig667:1..433. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF503970 vs. ExPASy Swiss-Prot
Match: C3H24_ORYSJ (Zinc finger CCCH domain-containing protein 24 OS=Oryza sativa subsp. japonica GN=Os03g0698800 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.170e-13
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 2
Query:    2 CWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEE 97
            CWLHPAQYRTRLCKDGTSC+RRVCFFAHT +E
Sbjct:  350 CWLHPAQYRTRLCKDGTSCNRRVCFFAHTTDE 381          

HSP 2 Score: 66.2402 bits (160), Expect = 6.320e-11
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 3
Query:  234 NPFSQPMSPSGNCNLQSSMMWPQPNVPTLNLPGSNIQXXXXXXXXXARDILPDNFSSLSDFDSQ 425
            +PF+ PMSPSGN  +  S+ W QPNVPTL+LPGS++Q         ARD+  D++S + D DSQ
Sbjct:  425 SPFTPPMSPSGN-GMPPSLGWQQPNVPTLHLPGSSLQSSRLRTSLSARDMPADDYSLMQDIDSQ 487          
BLAST of CF503970 vs. ExPASy Swiss-Prot
Match: C3H30_ARATH (Zinc finger CCCH domain-containing protein 30 OS=Arabidopsis thaliana GN=At2g41900 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.965e-12
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 2
Query:    2 CWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEE 97
            CWLHPAQYRTRLCKDGT C RRVCFFAHT EE
Sbjct:  330 CWLHPAQYRTRLCKDGTGCARRVCFFAHTPEE 361          
BLAST of CF503970 vs. ExPASy Swiss-Prot
Match: C3H56_ARATH (Zinc finger CCCH domain-containing protein 56 OS=Arabidopsis thaliana GN=At5g12850 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.172e-11
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 2
Query:    2 CWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEE 97
            CWLHPAQYRTRLCKDG  C+RRVCFFAH  EE
Sbjct:  326 CWLHPAQYRTRLCKDGMGCNRRVCFFAHANEE 357          
BLAST of CF503970 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.705e-11
Identity = 27/32 (84.38%), Postives = 28/32 (87.50%), Query Frame = 2
Query:    2 CWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEE 97
            CWLHPAQYRTRLCKD T+C RRVCFFAH  EE
Sbjct:  278 CWLHPAQYRTRLCKDETNCSRRVCFFAHKPEE 309          
BLAST of CF503970 vs. ExPASy Swiss-Prot
Match: C3H23_ARATH (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 6.320e-11
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 2
Query:    2 CWLHPAQYRTRLCKDGTSCDRRVCFFAHTAEEPPAIVC 115
            CWLHP++YRT+ CKDGTSC RR+CFFAHT E+   + C
Sbjct:  159 CWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLRVLPC 196          
The following BLAST results are available for this feature:
BLAST of CF503970 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
C3H24_ORYSJ5.170e-1390.63Zinc finger CCCH domain-containing protein 24 OS=O... [more]
C3H30_ARATH1.965e-1290.63Zinc finger CCCH domain-containing protein 30 OS=A... [more]
C3H56_ARATH2.172e-1184.38Zinc finger CCCH domain-containing protein 56 OS=A... [more]
C3H66_ARATH3.705e-1184.38Zinc finger CCCH domain-containing protein 66 OS=A... [more]
C3H23_ARATH6.320e-1165.79Zinc finger CCCH domain-containing protein 23 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-458 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_H01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503970 ID=CF503970; Name=CF503970; organism=Citrus sinensis; type=EST; length=434bp
GTGCTGGCTACACCCAGCTCAATACAGAACTCGACTTTGCAAAGATGGCA
CAAGCTGTGATAGACGGGTTTGCTTTTTTGCCCACACTGCCGAGGAGCCT
CCGGCCATTGTATGTCTCTAACGGGTCAGTGGTTCCTTCACCACGCTCCT
CTGTATCTGGTGCTAGTGTTATGGATATGGCTGCTGCTTTGCTTTTGCCA
GGTTCACCTTCATCAATGTCTGGCATGTCACCGAATCCATTTAGTCAGCC
CATGTCCCCTTCGGGAAATTGCAATTTGCAGTCATCCATGATGTGGCCTC
AGCCAAATGTGCCCACACTTAATCTGCCAGGAAGCAATATTCAATCTAGT
CGACTGAGATCTTCCCTTAGTGCTAGAGATATACTGCCTGATAATTTTAG
CTCATTGTCAGATTTTGATTCCCAGCAACACATT
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