CF503974

Overview
NameCF503974
Unique NameCF503974
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length678
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF503974 vs. ExPASy Swiss-Prot
Match: FUCO1_ARATH (Alpha-L-fucosidase 1 OS=Arabidopsis thaliana GN=FUC1 PE=1 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 3.580e-55
Identity = 90/166 (54.22%), Postives = 117/166 (70.48%), Query Frame = 1
Query:   79 LVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIFSDAGPDVRWVGNEKGFAGSTCWSTINRTSLSIGNGSIVDYLSTGDAKGTDWLPAECDVSIRRGGFGINPKHPRN*VSFL 576
            L +AAK  G+ +GLYLSPWDRH+  YG  L+YNE+YL+Q+ ELLT+YG+++E+W DGAKG    +M Y+F  WF+++ +LQ    IFSDAGPDVRW+G+E G AGSTCWS  NRT+  IG+ +   Y   GD  G DW+PAECDVSIR G F    + P+  V  L
Sbjct:  136 LASAAKEAGIGLGLYLSPWDRHEQCYGKTLEYNEFYLSQMTELLTKYGEIKEVWLDGAKGDGEKDMEYFFDTWFSLIHQLQPKAVIFSDAGPDVRWIGDEAGLAGSTCWSLFNRTNAKIGD-TEPSYSQEGDGYGQDWVPAECDVSIRPGWFWHASESPKPAVQLL 300          

HSP 2 Score: 36.5798 bits (83), Expect = 3.580e-55
Identity = 13/23 (56.52%), Postives = 19/23 (82.61%), Query Frame = 3
Query:    3 WPSKFTEHSVTHSPWKHGRGDVV 71
            WPS++T++SV  S W++G GDVV
Sbjct:  111 WPSEYTDYSVKSSQWRNGAGDVV 133          

HSP 3 Score: 73.9442 bits (180), Expect = 8.423e-13
Identity = 32/44 (72.73%), Postives = 38/44 (86.36%), Query Frame = 3
Query:  525 GGFWHKSETPKKLSELLEIYYNSVGRNCVMLLNVPPNTTGLISE 656
            G FWH SE+PK   +LL+IYYNSVGRNC+ LLNVPPN++GLISE
Sbjct:  284 GWFWHASESPKPAVQLLDIYYNSVGRNCLFLLNVPPNSSGLISE 327          
BLAST of CF503974 vs. ExPASy Swiss-Prot
Match: FUCO1_ORYSJ (Putative alpha-L-fucosidase 1 OS=Oryza sativa subsp. japonica GN=Os04g0560400 PE=3 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 1.348e-54
Identity = 92/166 (55.42%), Postives = 117/166 (70.48%), Query Frame = 1
Query:   79 LVNAAKARGVDVGLYLSPWDRHDPRYGHDLQYNEYYLAQLQELLTRYGDVREIWFDGAKGSNAPNMSYYFTDWFAMVKELQSSINIFSDAGPDVRWVGNEKGFAGSTCWSTINRTSLSIGNGSIVDYLSTGDAKGTDWLPAECDVSIRRGGFGINPKHPRN*VSFL 576
            L  AA+A G+ +GLYLSPWDRH+P YG  + YNE+YL Q+ ELLTRYGDV E+W DGAKG    +M Y F  WFA++ +LQ  + IFSDAGPD RWVG+E G AG TCWS  N+++++IG+  I +Y   GD  G DW+PAECDVSIR G F    + P+N  + L
Sbjct:  138 LAAAARAEGIGLGLYLSPWDRHEPVYGDTVAYNEHYLGQMTELLTRYGDVEEVWLDGAKG-EGKDMDYMFDAWFALIHQLQQRVVIFSDAGPDTRWVGDEAGVAGYTCWSPFNKSTVTIGH-IIPEYSRCGDPFGQDWVPAECDVSIRPGWFWHASEKPKNATTLL 301          

HSP 2 Score: 38.1206 bits (87), Expect = 1.348e-54
Identity = 16/25 (64.00%), Postives = 17/25 (68.00%), Query Frame = 3
Query:    3 WPSKFTEHSVTHSPWKHGRGDVVQE 77
            WPS  T +SV  SPWK G GDVV E
Sbjct:  113 WPSALTNYSVAASPWKGGAGDVVGE 137          

HSP 3 Score: 69.3218 bits (168), Expect = 2.075e-11
Identity = 29/43 (67.44%), Postives = 36/43 (83.72%), Query Frame = 3
Query:  525 GGFWHKSETPKKLSELLEIYYNSVGRNCVMLLNVPPNTTGLIS 653
            G FWH SE PK  + LL+IYY SVGRNC+++LNVPPN++GLIS
Sbjct:  285 GWFWHASEKPKNATTLLDIYYKSVGRNCLLILNVPPNSSGLIS 327          
The following BLAST results are available for this feature:
BLAST of CF503974 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FUCO1_ARATH3.580e-5554.22Alpha-L-fucosidase 1 OS=Arabidopsis thaliana GN=FU... [more]
FUCO1_ORYSJ1.348e-5455.42Putative alpha-L-fucosidase 1 OS=Oryza sativa subs... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-462 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_H05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503974 ID=CF503974; Name=CF503974; organism=Citrus sinensis; type=EST; length=678bp
TTTGGCCTTCGAAATTTACTGAGCATTCTGTGACTCATAGTCCCTGGAAA
CATGGACGCGGCGACGTCGTGCAAGAGCCTTGTCAATGCGGCTAAAGCCC
GTGGAGTCGATGTGGGGTTGTATTTATCACCCTGGGATCGCCATGATCCA
AGATATGGTCATGACTTGCAATACAATGAATATTATTTAGCTCAGTTGCA
AGAATTGCTCACAAGATATGGGGATGTGAGGGAGATTTGGTTTGATGGAG
CAAAAGGTTCAAATGCGCCAAACATGTCATATTATTTTACAGATTGGTTT
GCGATGGTGAAGGAGCTGCAGAGCTCAATTAACATTTTCTCCGACGCCGG
TCCCGACGTTAGATGGGTTGGTAATGAAAAGGGCTTCGCCGGAAGCACTT
GCTGGTCCACGATAAATCGAACTTCACTGTCAATCGGAAATGGAAGCATT
GTTGACTATCTAAGCACTGGCGATGCGAAAGGGACAGATTGGTTGCCAGC
AGAATGTGACGTTTCAATTAGAAGGGGGGGTTTTGGCATAAATCCGAAAC
ACCCAAGAAATTGAGTGAGCTTCTTGAGATTTACTATAACTCGGTGGGAA
GAAATTGTGTGATGCTGCTCAATGTGCCGCCCAATACAACCGGGCTGATA
TCCGAACTGATGTTCAGAGACTGAGAGA
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