CF503977

Overview
NameCF503977
Unique NameCF503977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7032 contig Csv1_Contig7032:114..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF503977 vs. ExPASy Swiss-Prot
Match: MYBJ_DICDI (Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.259e-11
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = 3 
Query:  207 WTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADEPLD 416
            WT+EEH  FL G+Q  GKG W+ IA+ +V +RTPTQ+ SHAQKY++RQ   ++ KR  S+ D+   + +D
Sbjct:  379 WTKEEHIRFLNGIQIHGKGAWKEIAQ-FVGTRTPTQIQSHAQKYYLRQKQETKNKR--SIHDLSLQDLID 445
The following BLAST results are available for this feature:
BLAST of CF503977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MYBJ_DICDI3.259e-1148.57Myb-like protein J OS=Dictyostelium discoideum GN=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-465 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503977 ID=CF503977; Name=CF503977; organism=Citrus sinensis; type=EST; length=568bp
ATTGACCGACGGCTCAATCCGGAAGAGTGCTAGTATGGGCAATCTCAGCC
ACTACGCCGGTTCGACTTCGGGTCATAATAACAATAACCGCGTCAAACAC
TCCTGATTCGCCCGGTGAGACGCCGGATCATCATGCTGACGGGTATGCGT
CGGAAGATTTCGTTCCCGGGTCATCGTCGAGTCGCGAACGCAAGAAAGGT
GTTCCATGGACTGAAGAGGAGCATAGGATGTTTTTACTTGGTTTGCAGAA
GCTGGGGAAAGGTGATTGGCGTGGAATTGCACGCAATTATGTTGTATCTA
GAACACCTACTCAAGTTGCCAGCCATGCTCAAAAATATTTTATCAGGCAA
AGCAATGTGTCTAGGAGAAAAAGACGGTCCAGCCTATTTGATATTGTTGC
AGATGAACCACTCGACACTCCAGCTGCATCACAGGACTTGTTTTCTGCCA
ACCATACGCAGGGTGAAACACAAAGTAACAACCCACTGCCTGCTCCTCCT
GCTTTGGATGAAGAATGTGAATCAATGGATTCTACCCAACTCCAATGATG
GAGAGCCGGCCCCTCCAA
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