CF503978

Overview
NameCF503978
Unique NameCF503978
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length725
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF503978_ssr93 microsatellite CF503978_ssr93:93..104. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2620 contig Csv1_Contig2620:81..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CF503978 vs. ExPASy Swiss-Prot
Match: IQD14_ARATH (Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQD14 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.848e-24
Identity = 66/108 (61.11%), Postives = 73/108 (67.59%), Query Frame = 3 
Query:  378 RRE---RPEPTLRYRHASATKIQAAYRGYMARRSFRALKGLVRLQGVVRGQNVKRQTTNAMKYMQLLXXXXXXXXXXXXXMLENQARRQAQHKNDKEAESTLGNGHLD 692
            RRE   RPEPTL  +HASATKIQ A+RGYMAR+SFRALKGLVRLQGVVRG +VKRQT NAMKYMQ +             MLENQA  Q +    K A S  GN + D
Sbjct:  307 RREIVYRPEPTLPVQHASATKIQGAFRGYMARKSFRALKGLVRLQGVVRGYSVKRQTINAMKYMQQVVRVQSQIQSRRIKMLENQA--QVEKDEAKWAASEAGNDNWD 412
The following BLAST results are available for this feature:
BLAST of CF503978 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IQD14_ARATH1.848e-2461.11Protein IQ-DOMAIN 14 OS=Arabidopsis thaliana GN=IQ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-466 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-11_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503978 ID=CF503978; Name=CF503978; organism=Citrus sinensis; type=EST; length=725bp
TTCCAAAGAAAAACTAGCCAATGAATCAGATAAGAAAAGCACCAAAGAAA
AGAAAAAGAAAGGGCTAGGGAAACTAAGGCATGGAGAGACTAATTCATTC
ATTCCCCTCTTTAGAGGGCCCGAGCAGTATTGAGAAAATTTTGGGGGAAG
CTGAAAGAGAGCAGAAATTAGTATTCAGGCCTCCAACTCCTCCCGAGCAA
CCCACAACACCACCTTTTGTTGCTCAGAGAGTTGCTTCTCCAAGGGTTCC
TTCTCAAAGGATTACCTCTCCAAGGGTTGCTTCTCCAAGGGTTGCCTCTC
CAAGGCCAGTGTCTCCAAGGGCAGCTTCTCCAAGGGCTGCTTCTCCAAGA
GCTGCTTCTCCTCGAATTGTTCAACATCGTAGGGAAAGACCAGAACCAAC
TCTAAGATATCGTCATGCTTCAGCTACTAAGATCCAAGCAGCCTACCGAG
GCTATATGGCAAGGAGGAGCTTCAGAGCTCTGAAGGGACTGGTGAGGCTT
CAAGGAGTGGTGAGGGGACAGAATGTAAAGCGCCAAACAACAAATGCCAT
GAAATACATGCAGCTCTTGGTACGTGTCCAATCTCAGATTCAGTCTAGGA
GGATCCAGATGTTAGAGAACCAAGCACGGCGTCAGGCACAACACAAGAAT
GATAAGGAAGCAGAAAGTACCTTAGGCAATGGACATTTGGATCTGAGCAG
GAATCATGAAGACTGGGATGCCAGC
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