CF503983

Overview
NameCF503983
Unique NameCF503983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF503983_ssr347 microsatellite CF503983_ssr347:347..356. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13649 contig Csv1_Contig13649:274..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF503983 vs. ExPASy Swiss-Prot
Match: PLT5_ARATH (Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 9.982e-14
Identity = 25/42 (59.52%), Postives = 34/42 (80.95%), Query Frame = 3 
Query:    3 VVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYTCLPRNAG 128
            V+S++FL +SKA+T GG+F+L+  IA+VAWVFFYT LP   G
Sbjct:  447 VISISFLPMSKAMTTGGAFYLFGGIATVAWVFFYTFLPETQG 488

HSP 2 Score: 38.5058 bits (88), Expect = 9.982e-14
Identity = 18/31 (58.06%), Postives = 22/31 (70.97%), Query Frame = 1 
Query:  115 PETQGKTLEEMGALFGNFRWLRDSKREKRRN 207
            PETQG+ LE+M  LF  FRW RDSK + + N
Sbjct:  484 PETQGRMLEDMDELFSGFRW-RDSKSKPKGN 513
[Close]
BLAST of CF503983 vs. ExPASy Swiss-Prot
Match: PLT1_ARATH (Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.858e-11
Identity = 25/42 (59.52%), Postives = 33/42 (78.57%), Query Frame = 3 
Query:    3 VVSMTFLSLSKAITIGGSFFLYASIASVAWVFFYTCLPRNAG 128
            ++ MTFLSLSK +TIGG+F L+A +A+ AWVFF+T LP   G
Sbjct:  438 IIGMTFLSLSKGLTIGGAFLLFAGVAAAAWVFFFTFLPETRG 479

HSP 2 Score: 29.261 bits (64), Expect = 1.858e-11
Identity = 15/36 (41.67%), Postives = 22/36 (61.11%), Query Frame = 1 
Query:  115 PETQGKTLEEMGALFGNFRWLRDSKREKRRNKANEI 222
            PET+G  LEEM  LFG++     +K+    +K NE+
Sbjct:  475 PETRGIPLEEMETLFGSY---TANKKNNSMSKDNEV 507
The following BLAST results are available for this feature:
BLAST of CF503983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PLT5_ARATH9.982e-1459.52Polyol transporter 5 OS=Arabidopsis thaliana GN=PL... [more]
PLT1_ARATH1.858e-1159.52Putative polyol transporter 1 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-471 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-12_A04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF503983 ID=CF503983; Name=CF503983; organism=Citrus sinensis; type=EST; length=455bp
GGGTCGTATCGATGACTTTCCTATCGCTTAGTAAAGCGATCACGATTGGC
GGCTCCTTCTTTCTATACGCGTCAATTGCATCAGTTGCGTGGGTGTTTTT
CTACACGTGTCTCCCCCGAAACGCAGGGTAAAACCCTTGAAGAGATGGGG
GCGCTCTTTGGTAATTTCCGTTGGCTGAGGGATTCCAAGAGAGAGAAGAG
GAGGAACAAAGCCAACGAGATTAACGGTGACGGTGCGAGTAACGTTCAGT
TAGGGCCGGTTTCTAACGGTAACTGAAGGGTATTTTAGTAAATACGATGC
TTTTTAAAATCTTGGTGTAGCTTTGTAAAATGAATACTGTGTCGTGGTGT
GTGTGTGCTGATCACTAATGGGCGATTGAAGAAGTCATTATGCAATGAAA
ATGAAGCACTATGAATCAAATAGATATAATACTTCTTATAAAAAAAAAAA
AAAAA
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